PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47051-47100 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.1705 | 23 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 46.5116 | 22 | 3 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.8846 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 87.8307 | 23 | 1 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.1961 | 100.0000 | 82.1429 | 88.0342 | 23 | 0 | 23 | 5 | 4 | 80.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.6190 | 19 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.4427 | 23 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 45.2381 | 22 | 3 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.2277 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 87.8307 | 23 | 1 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.1961 | 100.0000 | 82.1429 | 87.8261 | 23 | 0 | 23 | 5 | 4 | 80.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 54.7170 | 23 | 2 | 23 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m0_e0 | * | 95.8333 | 95.8333 | 95.8333 | 97.6967 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 90.8000 | 30 | 5 | 23 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9661 | 63.8889 | 100.0000 | 90.5738 | 23 | 13 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 91.0506 | 30 | 5 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 91.0448 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e0 | het | 85.1852 | 76.6667 | 95.8333 | 92.0000 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e1 | het | 85.1852 | 76.6667 | 95.8333 | 92.1824 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | segdup | het | 95.8333 | 95.8333 | 95.8333 | 97.0223 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 82.1429 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 84.9398 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 93.8776 | 95.8333 | 92.0000 | 84.9398 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | homalt | 93.8776 | 92.0000 | 95.8333 | 97.2603 | 23 | 2 | 23 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.2558 | 19 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.0882 | 23 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 43.9024 | 22 | 3 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 78.5047 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.7255 | 23 | 1 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.8333 | 95.8333 | 95.8333 | 91.9192 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.4615 | 100.0000 | 79.3103 | 87.8661 | 23 | 0 | 23 | 6 | 5 | 83.3333 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 91.0156 | 30 | 5 | 23 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9661 | 63.8889 | 100.0000 | 90.4959 | 23 | 13 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.3419 | 23 | 0 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.6049 | 19 | 0 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 23 | 0 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.6170 | 88.0000 | 100.0000 | 45.2381 | 22 | 3 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 73.5632 | 22 | 4 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.8333 | 95.8333 | 95.8333 | 71.7647 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.3249 | 23 | 1 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 85.4369 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | * | 93.8776 | 88.4615 | 100.0000 | 92.5325 | 23 | 3 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.0000 | 88.4615 | 95.8333 | 93.6000 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.0000 | 88.4615 | 95.8333 | 93.6675 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 53.8462 | 23 | 2 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | func_cds | het | 97.8723 | 95.8333 | 100.0000 | 37.8378 | 23 | 1 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.7925 | 95.8333 | 79.3103 | 78.0303 | 23 | 1 | 23 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 90.4959 | 30 | 5 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | homalt | 83.6364 | 95.8333 | 74.1935 | 78.9116 | 23 | 1 | 23 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 91.0853 | 23 | 1 | 23 | 0 | 0 | ||