PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47001-47050 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 39.3162 | 33.8235 | 46.9388 | 96.7399 | 23 | 45 | 23 | 26 | 20 | 76.9231 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 55.8807 | 43.1373 | 79.3103 | 88.0165 | 22 | 29 | 23 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | HG002compoundhet | homalt | 0.9875 | 87.5000 | 0.4965 | 31.5704 | 21 | 3 | 23 | 4609 | 4348 | 94.3372 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.2151 | 70.8333 | 62.1622 | 50.0000 | 17 | 7 | 23 | 14 | 14 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 50.5495 | 48.9362 | 52.2727 | 95.2586 | 23 | 24 | 23 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 17.0866 | 13.7546 | 22.5490 | 86.7704 | 37 | 232 | 23 | 79 | 9 | 11.3924 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.2928 | 23 | 0 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | HG002compoundhet | het | 95.7890 | 95.7447 | 95.8333 | 94.6309 | 45 | 2 | 23 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 86.8644 | 23 | 0 | 23 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.8333 | 92.0000 | 100.0000 | 65.1515 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | * | 92.0000 | 95.8333 | 88.4615 | 97.8862 | 23 | 1 | 23 | 3 | 1 | 33.3333 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.1961 | 85.1852 | 95.8333 | 97.7941 | 23 | 4 | 23 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 90.1961 | 85.1852 | 95.8333 | 95.4111 | 23 | 4 | 23 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.8017 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.7218 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | segdup | het | 97.8723 | 95.8333 | 100.0000 | 97.1429 | 23 | 1 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 92.0000 | 92.0000 | 92.0000 | 96.0000 | 23 | 2 | 23 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 92.0000 | 92.0000 | 92.0000 | 96.4689 | 23 | 2 | 23 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 97.9261 | 23 | 4 | 23 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 97.0361 | 23 | 3 | 23 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 56.7901 | 56.0976 | 57.5000 | 80.9524 | 23 | 18 | 23 | 17 | 16 | 94.1176 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | * | 90.1961 | 95.8333 | 85.1852 | 98.5842 | 23 | 1 | 23 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | * | 63.5213 | 63.1579 | 63.8889 | 58.1395 | 12 | 7 | 23 | 13 | 10 | 76.9231 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 67.1429 | 0 | 206 | 23 | 69 | 23 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 38.3333 | 68.9119 | 0 | 47 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 38.3333 | 68.7500 | 0 | 15 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | * | 62.1299 | 60.4651 | 63.8889 | 40.0000 | 26 | 17 | 23 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.5766 | 54.7619 | 24.2105 | 97.0652 | 23 | 19 | 23 | 72 | 1 | 1.3889 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 91.6435 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 92.3274 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | hetalt | 60.6593 | 46.1538 | 88.4615 | 98.5126 | 24 | 28 | 23 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 54.9650 | 39.1892 | 92.0000 | 88.1517 | 29 | 45 | 23 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 50.2732 | 40.0000 | 67.6471 | 91.9622 | 24 | 36 | 23 | 11 | 2 | 18.1818 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 27.8246 | 18.0645 | 60.5263 | 85.0394 | 28 | 127 | 23 | 15 | 3 | 20.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | het | 25.8366 | 16.7832 | 56.0976 | 90.6818 | 24 | 119 | 23 | 18 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 57.1133 | 40.6780 | 95.8333 | 48.9362 | 24 | 35 | 23 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.1429 | 69.6970 | 100.0000 | 83.8028 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.1429 | 69.6970 | 100.0000 | 85.8896 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.1429 | 69.6970 | 100.0000 | 86.3095 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 83.9744 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 85.3801 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | hetalt | 93.8776 | 95.8333 | 92.0000 | 85.4651 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | * | 41.1326 | 31.5789 | 58.9744 | 81.6901 | 24 | 52 | 23 | 16 | 1 | 6.2500 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2323 | 22.7723 | 23.7113 | 98.6305 | 23 | 78 | 23 | 74 | 6 | 8.1081 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.0882 | 23 | 0 | 23 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 74.1935 | 82.1429 | 67.6471 | 96.4876 | 23 | 5 | 23 | 11 | 1 | 9.0909 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 89.0995 | 23 | 1 | 23 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 79.3103 | 100.0000 | 65.7143 | 87.1324 | 23 | 0 | 23 | 12 | 11 | 91.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.8861 | 19 | 0 | 23 | 0 | 0 | ||