PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46551-46600 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 8.6957 | 21 | 2 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 97.4099 | 21 | 3 | 21 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 84.0000 | 87.5000 | 80.7692 | 72.3404 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.3043 | 95.4545 | 87.5000 | 81.2500 | 21 | 1 | 21 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | * | 84.0000 | 77.7778 | 91.3043 | 94.3902 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.6217 | 88.0000 | 91.3043 | 43.9024 | 22 | 3 | 21 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.3636 | 87.5000 | 67.7419 | 76.6917 | 21 | 3 | 21 | 10 | 9 | 90.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.8100 | 68.5714 | 95.4545 | 89.7674 | 24 | 11 | 21 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 82.7869 | 21 | 1 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 84.7826 | 21 | 1 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.4545 | 95.4545 | 95.4545 | 84.7222 | 21 | 1 | 21 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | * | 91.3043 | 84.0000 | 100.0000 | 93.6556 | 21 | 4 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | * | 91.3043 | 84.0000 | 100.0000 | 94.5312 | 21 | 4 | 21 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.7143 | 77.7778 | 95.4545 | 96.1268 | 21 | 6 | 21 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 58.3333 | 60.0000 | 56.7568 | 97.1604 | 3 | 2 | 21 | 16 | 13 | 81.2500 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.7692 | 96.2804 | 0 | 0 | 21 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9620 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3846 | 21 | 2 | 21 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l100_m0_e0 | het | 51.2195 | 35.0000 | 95.4545 | 93.0380 | 21 | 39 | 21 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | HG002compoundhet | het | 19.1083 | 31.9149 | 13.6364 | 72.1014 | 15 | 32 | 21 | 133 | 118 | 88.7218 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | homalt | 64.6154 | 47.7273 | 100.0000 | 93.0233 | 21 | 23 | 21 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 34.3750 | 21 | 3 | 21 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 64.8148 | 55.5556 | 77.7778 | 89.0688 | 20 | 16 | 21 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9634 | 21 | 0 | 21 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.4545 | 91.3043 | 100.0000 | 78.1250 | 21 | 2 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 32.2581 | 21 | 0 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2267 | 95.0000 | 95.4545 | 93.3333 | 19 | 1 | 21 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 95.9064 | 21 | 1 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e1 | * | 97.6744 | 95.4545 | 100.0000 | 96.0076 | 21 | 1 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.2353 | 21 | 0 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 97.0085 | 21 | 1 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 97.6744 | 95.4545 | 100.0000 | 97.0833 | 21 | 1 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 91.3043 | 87.5000 | 95.4545 | 98.3321 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.6990 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 90.7950 | 22 | 2 | 22 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.8378 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 22 | 0 | 22 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.4000 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.8855 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | het | 78.5714 | 66.6667 | 95.6522 | 98.0833 | 22 | 11 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | homalt | 53.6585 | 36.6667 | 100.0000 | 94.3005 | 22 | 38 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | homalt | 53.6585 | 36.6667 | 100.0000 | 94.4584 | 22 | 38 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m1_e0 | het | 50.5747 | 34.3750 | 95.6522 | 94.4175 | 22 | 42 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | homalt | 65.6716 | 48.8889 | 100.0000 | 94.1176 | 22 | 23 | 22 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0815 | 22 | 2 | 22 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 22 | 0 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m1_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 75.2809 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.2453 | 22 | 2 | 22 | 0 | 0 | ||