PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46501-46550 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 77.7778 | 95.4545 | 65.6250 | 81.0651 | 21 | 1 | 21 | 11 | 8 | 72.7273 | |
| qzeng-custom | SNP | ti | map_l100_m2_e0 | hetalt | 82.3529 | 70.0000 | 100.0000 | 88.3978 | 21 | 9 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9595 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 68.8525 | 63.6364 | 75.0000 | 92.5134 | 21 | 12 | 21 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9533 | 21 | 0 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 9.2511 | 83.1727 | 0 | 0 | 21 | 206 | 16 | 7.7670 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 28.7671 | 96.2526 | 0 | 0 | 21 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 28.7671 | 96.3169 | 0 | 0 | 21 | 52 | 4 | 7.6923 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | homalt | 80.7692 | 72.4138 | 91.3043 | 91.7563 | 21 | 8 | 21 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 61.7234 | 51.1628 | 77.7778 | 78.2258 | 22 | 21 | 21 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5581 | 87.5000 | 20.0000 | 45.0262 | 21 | 3 | 21 | 84 | 84 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | homalt | 71.7949 | 56.0000 | 100.0000 | 93.8416 | 28 | 22 | 21 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | segdup | hetalt | 56.4516 | 41.6667 | 87.5000 | 98.6644 | 20 | 28 | 21 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 75.0000 | 99.9757 | 0 | 1 | 21 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 48.9054 | 43.8596 | 55.2632 | 99.4833 | 25 | 32 | 21 | 17 | 14 | 82.3529 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 51.7879 | 47.6190 | 56.7568 | 99.4738 | 20 | 22 | 21 | 16 | 13 | 81.2500 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | homalt | 59.7865 | 44.4444 | 91.3043 | 78.7037 | 16 | 20 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 58.6900 | 43.2432 | 91.3043 | 78.8991 | 16 | 21 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 74.0741 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.7412 | 20 | 0 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9636 | 21 | 0 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 93.0233 | 86.9565 | 100.0000 | 95.7916 | 20 | 3 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m0_e0 | homalt | 89.3617 | 84.0000 | 95.4545 | 97.8744 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m0_e0 | * | 91.3043 | 87.5000 | 95.4545 | 98.1481 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 34.8293 | 37.7778 | 32.3077 | 48.0000 | 17 | 28 | 21 | 44 | 33 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | * | 33.6000 | 24.4186 | 53.8462 | 69.2913 | 21 | 65 | 21 | 18 | 16 | 88.8889 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | het | 53.8462 | 46.6667 | 63.6364 | 86.1925 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | het | 53.8462 | 46.6667 | 63.6364 | 87.4046 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | het | 53.8462 | 46.6667 | 63.6364 | 87.6866 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9633 | 21 | 0 | 21 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3020 | 21 | 2 | 21 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.2353 | 21 | 0 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9633 | 21 | 0 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 94.8655 | 21 | 2 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 93.3333 | 87.5000 | 100.0000 | 91.1765 | 21 | 3 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 80.8415 | 91.4894 | 72.4138 | 94.0574 | 43 | 4 | 21 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.0811 | 20 | 2 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.0513 | 20 | 2 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6446 | 20 | 2 | 21 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | hetalt | 91.3043 | 91.3043 | 91.3043 | 96.2602 | 21 | 2 | 21 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.2353 | 21 | 0 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.3617 | 80.7692 | 100.0000 | 90.4110 | 21 | 5 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 74.3902 | 19 | 4 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.4138 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |