PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46401-46450 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 92.2261 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 91.3043 | 89.9123 | 0 | 0 | 21 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 94.0217 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 95.1737 | 0 | 0 | 21 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 96.5612 | 0 | 0 | 21 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.4545 | 93.2308 | 0 | 0 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 96.9343 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.2074 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 97.2585 | 0 | 0 | 21 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.2621 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.3075 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 61.7234 | 51.1628 | 77.7778 | 78.2258 | 22 | 21 | 21 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4444 | 89.4737 | 100.0000 | 70.4225 | 17 | 2 | 21 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 34.3750 | 21 | 0 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.4545 | 95.4545 | 95.4545 | 87.6404 | 21 | 1 | 21 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 79.6117 | 21 | 1 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 81.8966 | 21 | 1 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 97.6744 | 95.4545 | 100.0000 | 82.5000 | 21 | 1 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 21 | 0 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.3617 | 80.7692 | 100.0000 | 91.3934 | 21 | 5 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 74.0741 | 19 | 4 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 98.8990 | 21 | 3 | 21 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.7078 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 82.3529 | 72.4138 | 95.4545 | 87.4286 | 21 | 8 | 21 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 95.4545 | 90.4762 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 93.9891 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 91.3043 | 96.7514 | 0 | 0 | 21 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.4545 | 93.4328 | 0 | 0 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 96.8563 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.1583 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 97.2037 | 0 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.1940 | 78.5714 | 95.4545 | 89.0000 | 22 | 6 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.6522 | 91.6667 | 100.0000 | 68.6567 | 22 | 2 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 21 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.6087 | 70.3704 | 100.0000 | 76.4045 | 19 | 8 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9618 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | het | 84.0000 | 87.5000 | 80.7692 | 33.3333 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.3529 | 80.7692 | 84.0000 | 97.6258 | 21 | 5 | 21 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 30.0000 | 21 | 0 | 21 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.3043 | 84.0000 | 100.0000 | 63.1579 | 21 | 4 | 21 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.5000 | 77.7778 | 100.0000 | 98.1350 | 21 | 6 | 21 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.5610 | 95.2381 | 100.0000 | 99.9606 | 20 | 1 | 21 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.6842 | 58.3333 | 100.0000 | 90.7080 | 21 | 15 | 21 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9492 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.1501 | 21 | 2 | 21 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9523 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.5414 | 21 | 2 | 21 | 0 | 0 | ||