PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46251-46300 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.6514 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.3009 | 20 | 2 | 20 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 13.0435 | 20 | 3 | 20 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.1064 | 76.9231 | 95.2381 | 94.1989 | 20 | 6 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | decoy | het | 63.4921 | 50.0000 | 86.9565 | 99.7259 | 3 | 3 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 52.6316 | 50.0000 | 55.5556 | 97.1787 | 2 | 2 | 20 | 16 | 13 | 81.2500 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 95.2381 | 94.7368 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 95.2381 | 85.1064 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 60.6061 | 95.0000 | 0 | 0 | 20 | 13 | 10 | 76.9231 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.2866 | 9.6774 | 36.3636 | 52.5862 | 18 | 168 | 20 | 35 | 30 | 85.7143 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 20.7254 | 14.2857 | 37.7358 | 50.4673 | 5 | 30 | 20 | 33 | 29 | 87.8788 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3816 | 20 | 0 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.7507 | 20 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.4233 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.3271 | 20 | 0 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.8485 | 18 | 0 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 20 | 0 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.2481 | 25 | 2 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.3846 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 80.3922 | 20 | 2 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.3009 | 20 | 2 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.9060 | 20 | 2 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.5610 | 100.0000 | 95.2381 | 99.3365 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.2693 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.9875 | 20 | 1 | 20 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 96.5463 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.0549 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 97.1317 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 92.6829 | 86.3636 | 100.0000 | 97.4392 | 19 | 3 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 92.6829 | 86.3636 | 100.0000 | 97.5093 | 19 | 3 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.0140 | 18 | 0 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 64.9123 | 19 | 1 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.7959 | 81.4815 | 100.0000 | 92.4528 | 22 | 5 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 98.6155 | 20 | 4 | 20 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | * | 95.2381 | 90.9091 | 100.0000 | 56.5217 | 20 | 2 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 96.6346 | 20 | 7 | 20 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 96.7311 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 93.0233 | 100.0000 | 86.9565 | 97.1106 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 93.0233 | 100.0000 | 86.9565 | 97.1744 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4128 | 20 | 0 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9624 | 18 | 0 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.9123 | 20 | 0 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.2481 | 25 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.4447 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.6514 | 20 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.6066 | 20 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1270 | 20 | 2 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 95.2607 | 19 | 2 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 95.8763 | 19 | 2 | 20 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 54.4803 | 41.3043 | 80.0000 | 88.4793 | 19 | 27 | 20 | 5 | 3 | 60.0000 | |