PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45951-46000 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.8511 | 90.4762 | 73.0769 | 99.9443 | 19 | 2 | 19 | 7 | 6 | 85.7143 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.4762 | 82.6087 | 100.0000 | 66.6667 | 19 | 4 | 19 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | * | 35.2996 | 22.9885 | 76.0000 | 91.9094 | 20 | 67 | 19 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.0000 | 90.4762 | 100.0000 | 24.0000 | 19 | 2 | 19 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_siren | homalt | 90.4762 | 90.4762 | 90.4762 | 95.1276 | 19 | 2 | 19 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8370 | 19 | 0 | 19 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.4762 | 82.6087 | 100.0000 | 13.6364 | 19 | 4 | 19 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.4444 | 73.0769 | 100.0000 | 97.5228 | 19 | 7 | 19 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.6916 | 19 | 4 | 19 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.1003 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5593 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6667 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4483 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5593 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m1_e0 | * | 84.4444 | 76.0000 | 95.0000 | 94.6237 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | * | 84.4444 | 76.0000 | 95.0000 | 95.2830 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.6829 | 95.0000 | 90.4762 | 99.2519 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.4359 | 95.0000 | 100.0000 | 99.3781 | 19 | 1 | 19 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.6829 | 90.4762 | 95.0000 | 95.2830 | 19 | 2 | 19 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.6829 | 90.4762 | 95.0000 | 95.8506 | 19 | 2 | 19 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.1583 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.6000 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 97.6510 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | tech_badpromoters | * | 95.0000 | 100.0000 | 90.4762 | 48.7805 | 19 | 0 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 84.6774 | 17 | 1 | 19 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.3452 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 45.7143 | 19 | 0 | 19 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 93.9024 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3115 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 95.0000 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 95.6790 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 95.7831 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.4904 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.2607 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6087 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.2520 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.7328 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 95.2273 | 20 | 7 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3084 | 20 | 0 | 20 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.8710 | 20 | 0 | 20 | 0 | 0 | ||