PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45651-45700 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.9412 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9821 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 83.3333 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.2595 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.6712 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 88.0000 | 18 | 2 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 97.2973 | 100.0000 | 94.7368 | 97.5765 | 18 | 0 | 18 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.7350 | 81.2500 | 10.5882 | 85.7263 | 13 | 3 | 18 | 152 | 2 | 1.3158 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | hetalt | 87.8049 | 78.2609 | 100.0000 | 95.4774 | 18 | 5 | 18 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | * | het | 50.0000 | 42.8571 | 60.0000 | 97.5610 | 3 | 4 | 18 | 12 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.0000 | 85.7143 | 26.0870 | 33.0097 | 18 | 3 | 18 | 51 | 51 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 28.8000 | 20.0000 | 51.4286 | 92.7835 | 19 | 76 | 18 | 17 | 3 | 17.6471 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 28.5000 | 17.5926 | 75.0000 | 88.5167 | 19 | 89 | 18 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 6.1644 | 3.6217 | 20.6897 | 83.3652 | 18 | 479 | 18 | 69 | 58 | 84.0580 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.3077 | 100.0000 | 85.7143 | 93.1596 | 1 | 0 | 18 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 56.2500 | 94.7798 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 56.2500 | 95.3148 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 56.2500 | 95.4155 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4660 | 0 | 0 | 18 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 41.9355 | 18 | 1 | 18 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 36.2774 | 80.9524 | 23.3766 | 99.8723 | 17 | 4 | 18 | 59 | 32 | 54.2373 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 97.6824 | 0 | 0 | 18 | 9 | 2 | 22.2222 | |
| gduggal-snapfb | SNP | * | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 90.6404 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | * | 58.5732 | 59.0909 | 58.0645 | 94.8845 | 13 | 9 | 18 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 2.1951 | 1.1236 | 47.3684 | 61.6162 | 1 | 88 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 3.6290 | 1.8868 | 47.3684 | 61.2245 | 1 | 52 | 18 | 20 | 12 | 60.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 36.7347 | 63.4328 | 0 | 414 | 18 | 31 | 12 | 38.7097 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 37.5000 | 63.6364 | 0 | 106 | 18 | 30 | 11 | 36.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 13.7405 | 7.6923 | 64.2857 | 76.0684 | 2 | 24 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 18.9474 | 11.1111 | 64.2857 | 75.6522 | 2 | 16 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | het | 69.8061 | 87.5000 | 58.0645 | 43.6364 | 21 | 3 | 18 | 13 | 12 | 92.3077 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.1449 | 70.2703 | 64.2857 | 89.1892 | 26 | 11 | 18 | 10 | 2 | 20.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.3138 | 62.5000 | 94.7368 | 94.7368 | 30 | 18 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 72.5806 | 58.8235 | 94.7368 | 94.8087 | 30 | 21 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | homalt | 78.2609 | 69.2308 | 90.0000 | 92.1569 | 18 | 8 | 18 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 60.3774 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 12.1622 | 90.0738 | 0 | 0 | 18 | 130 | 4 | 3.0769 | |