PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45601-45650 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.6712 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 88.0000 | 18 | 2 | 18 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.7011 | 18 | 0 | 18 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.4749 | 89.4737 | 81.8182 | 90.4348 | 17 | 2 | 18 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | * | 94.7368 | 94.7368 | 94.7368 | 45.7143 | 18 | 1 | 18 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 90.6736 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.7368 | 94.7368 | 94.7368 | 81.7308 | 18 | 1 | 18 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 85.2459 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.0504 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.4126 | 18 | 2 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.7192 | 73.8095 | 64.2857 | 97.6068 | 31 | 11 | 18 | 10 | 2 | 20.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.0000 | 81.8182 | 64.2857 | 67.4419 | 18 | 4 | 18 | 10 | 8 | 80.0000 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 81.8182 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5184 | 18 | 0 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 84.0708 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.2595 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 86.6667 | 18 | 2 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.8716 | 18 | 0 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 93.3824 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 93.5018 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 69.2308 | 94.7368 | 96.7185 | 18 | 8 | 18 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 41.9355 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 82.3529 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 85.0000 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.9565 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.4126 | 18 | 2 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.1482 | 18 | 0 | 18 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 97.2973 | 100.0000 | 94.7368 | 95.2970 | 18 | 0 | 18 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.6710 | 18 | 0 | 18 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 95.6803 | 18 | 0 | 18 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.5122 | 18 | 1 | 18 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.5619 | 18 | 1 | 18 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l150_m1_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 89.5833 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l150_m2_e1 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 89.5833 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 90.0000 | 90.0000 | 90.0000 | 91.0314 | 18 | 2 | 18 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.2255 | 18 | 3 | 18 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8333 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 43.7500 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.8854 | 18 | 1 | 18 | 0 | 0 | ||