PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45301-45350 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I16_PLUS | segdup | homalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9524 | 70.8333 | 94.4444 | 73.9130 | 17 | 7 | 17 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | ti | map_l100_m1_e0 | hetalt | 73.9130 | 58.6207 | 100.0000 | 74.2424 | 17 | 12 | 17 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | hetalt | 66.6667 | 51.5152 | 94.4444 | 86.6667 | 17 | 16 | 17 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 51.5152 | 34.6939 | 100.0000 | 32.0000 | 17 | 32 | 17 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0972 | 17 | 0 | 17 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.0540 | 17 | 10 | 17 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.2000 | 33 | 9 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m2_e1 | hetalt | 86.8421 | 76.7442 | 100.0000 | 93.2806 | 33 | 10 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.4444 | 97.6127 | 0 | 0 | 17 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 35.7190 | 84.2105 | 22.6667 | 92.9112 | 16 | 3 | 17 | 58 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 48.4848 | 17 | 0 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_siren | homalt | 69.6721 | 71.4286 | 68.0000 | 85.3801 | 15 | 6 | 17 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.3333 | 77.7778 | 80.9524 | 75.8621 | 21 | 6 | 17 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 92.9961 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 45.4545 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m1_e0 | * | 94.4444 | 94.4444 | 94.4444 | 96.3190 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.9048 | 0 | 0 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 72.5806 | 18 | 8 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 72.5806 | 18 | 8 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 85.4701 | 17 | 2 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.7698 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 88.5135 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 88.8158 | 18 | 2 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 17 | 0 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 78.1609 | 66.6667 | 94.4444 | 77.5000 | 18 | 9 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 85.9504 | 18 | 1 | 17 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 37.9310 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1429 | 100.0000 | 94.4444 | 80.6452 | 16 | 0 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | * | 70.8333 | 65.3846 | 77.2727 | 89.0000 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | * | 70.8333 | 65.3846 | 77.2727 | 91.2698 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | * | 70.8333 | 65.3846 | 77.2727 | 91.4062 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | homalt | 53.1250 | 38.6364 | 85.0000 | 92.5094 | 17 | 27 | 17 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9564 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 51.4286 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.8919 | 94.4444 | 89.4737 | 95.6522 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.8919 | 94.4444 | 89.4737 | 95.6720 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9558 | 16 | 0 | 17 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0612 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m1_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.9555 | 17 | 4 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.6410 | 17 | 4 | 17 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 87.3039 | 94.7368 | 80.9524 | 97.4042 | 18 | 1 | 17 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 91.8919 | 100.0000 | 85.0000 | 97.7503 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 89.4737 | 94.4444 | 85.0000 | 97.7925 | 17 | 1 | 17 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 94.4444 | 100.0000 | 89.4737 | 95.6221 | 14 | 0 | 17 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 94.4444 | 100.0000 | 89.4737 | 95.7207 | 14 | 0 | 17 | 2 | 0 | 0.0000 | |