PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45201-45250 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.7778 | 17 | 0 | 17 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1452 | 17 | 0 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.5381 | 34 | 8 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | hetalt | 88.3117 | 79.0698 | 100.0000 | 95.5959 | 34 | 9 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 30.3571 | 17.8947 | 100.0000 | 94.0767 | 17 | 78 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 48.5714 | 32.0755 | 100.0000 | 84.9558 | 17 | 36 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 53.9683 | 37.7778 | 94.4444 | 90.3743 | 17 | 28 | 17 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | homalt | 91.4286 | 84.2105 | 100.0000 | 88.1944 | 16 | 3 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 45.9459 | 33.3333 | 73.9130 | 97.2684 | 17 | 34 | 17 | 6 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | * | 87.1795 | 77.2727 | 100.0000 | 73.4375 | 17 | 5 | 17 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | hetalt | 72.3404 | 56.6667 | 100.0000 | 89.8204 | 17 | 13 | 17 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.6485 | 0 | 0 | 17 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.2018 | 0 | 0 | 17 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.5439 | 0 | 0 | 17 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.7350 | 0 | 0 | 17 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 68.0000 | 99.2789 | 0 | 0 | 17 | 8 | 3 | 37.5000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 69.3878 | 65.3846 | 73.9130 | 90.4167 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 69.3878 | 65.3846 | 73.9130 | 91.8149 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | * | 69.3878 | 65.3846 | 73.9130 | 91.9861 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | * | 82.9268 | 77.2727 | 89.4737 | 53.6585 | 17 | 5 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.5897 | 28.8136 | 89.4737 | 70.7692 | 17 | 42 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 64.1509 | 47.2222 | 100.0000 | 59.5238 | 17 | 19 | 17 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.5556 | 65.3846 | 89.4737 | 97.1386 | 17 | 9 | 17 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | hetalt | 76.1978 | 69.0476 | 85.0000 | 95.2719 | 29 | 13 | 17 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | hetalt | 75.2098 | 67.4419 | 85.0000 | 95.3271 | 29 | 14 | 17 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 31.7757 | 19.5402 | 85.0000 | 99.9795 | 17 | 70 | 17 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | hetalt | 68.0000 | 51.5152 | 100.0000 | 97.2447 | 17 | 16 | 17 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 89.4737 | 96.8543 | 0 | 0 | 17 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 53.1250 | 95.4416 | 0 | 0 | 17 | 15 | 13 | 86.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | * | 69.3878 | 60.7143 | 80.9524 | 90.2326 | 17 | 11 | 17 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.4737 | 85.0000 | 94.4444 | 87.2340 | 17 | 3 | 17 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.4737 | 85.0000 | 94.4444 | 88.0000 | 17 | 3 | 17 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | * | 89.4737 | 89.4737 | 89.4737 | 42.4242 | 17 | 2 | 17 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 21.6364 | 12.9630 | 65.3846 | 59.3750 | 14 | 94 | 17 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 42.7673 | 28.5714 | 85.0000 | 56.5217 | 10 | 25 | 17 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.4975 | 22.2222 | 68.0000 | 60.3175 | 6 | 21 | 17 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.7735 | 1 | 0 | 17 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | het | 74.7253 | 66.6667 | 85.0000 | 84.1270 | 6 | 3 | 17 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.3404 | 60.7143 | 89.4737 | 90.1042 | 17 | 11 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 46.1240 | 34.8974 | 68.0000 | 71.9101 | 119 | 222 | 17 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 32.7273 | 19.5652 | 100.0000 | 62.2222 | 18 | 74 | 17 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 34.0000 | 20.4819 | 100.0000 | 32.0000 | 17 | 66 | 17 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4367 | 17 | 0 | 17 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | homalt | 82.9268 | 70.8333 | 100.0000 | 87.0229 | 17 | 7 | 17 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 94.4444 | 91.5493 | 0 | 0 | 17 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.4444 | 97.2769 | 0 | 0 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.9431 | 0 | 0 | 17 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 84.4828 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.5912 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 88.1944 | 18 | 1 | 17 | 0 | 0 | ||