PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44851-44900 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 56.1404 | 44.4444 | 76.1905 | 92.0152 | 4 | 5 | 16 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | * | 50.0000 | 34.0426 | 94.1176 | 94.5860 | 16 | 31 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m1_e0 | homalt | 64.0000 | 47.0588 | 100.0000 | 75.7576 | 16 | 18 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 48.3871 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 44.8276 | 16 | 4 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | segdup | het | 78.0488 | 66.6667 | 94.1176 | 92.7039 | 16 | 8 | 16 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 71.6418 | 60.0000 | 88.8889 | 67.8571 | 15 | 10 | 16 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 20.0000 | 14 | 9 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 91.7476 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 84.2105 | 94.1176 | 92.0188 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.1176 | 94.1176 | 94.1176 | 99.4642 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8797 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8863 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.2857 | 12 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.2995 | 89.4737 | 76.1905 | 96.8278 | 17 | 2 | 16 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 97.3464 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 97.3973 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 90.2857 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 90.4494 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 54.2857 | 16 | 1 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.5000 | 77.7778 | 100.0000 | 78.3784 | 14 | 4 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.1176 | 100.0000 | 88.8889 | 81.2500 | 15 | 0 | 16 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 69.5652 | 96.0684 | 0 | 0 | 16 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 66.6667 | 95.9664 | 0 | 0 | 16 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 80.0000 | 90.0498 | 0 | 0 | 16 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 44.8276 | 19 | 0 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 65.3061 | 72.7273 | 59.2593 | 88.7967 | 8 | 3 | 16 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m1_e0 | het | 84.2105 | 88.8889 | 80.0000 | 89.9497 | 8 | 1 | 16 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 80.0000 | 88.8889 | 72.7273 | 89.8618 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 80.0000 | 88.8889 | 72.7273 | 89.9083 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.4903 | 70.1987 | 100.0000 | 69.8113 | 106 | 45 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 61.0354 | 58.3333 | 64.0000 | 82.6389 | 7 | 5 | 16 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 78.0822 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 80.7229 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 77.7778 | 63.6364 | 100.0000 | 81.6092 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.1176 | 94.1176 | 94.1176 | 99.2682 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8747 | 16 | 0 | 16 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.4286 | 100.0000 | 84.2105 | 82.0755 | 15 | 0 | 16 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | het | 94.1176 | 94.1176 | 94.1176 | 91.3706 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 82.9787 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.7143 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m1_e0 | hetalt | 87.3239 | 77.5000 | 100.0000 | 92.6941 | 31 | 9 | 16 | 0 | 0 | ||