PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44501-44550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 83.3333 | 75.0000 | 93.7500 | 99.9211 | 12 | 4 | 15 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0000 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0276 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.7742 | 100.0000 | 93.7500 | 95.6989 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | het | 88.2353 | 83.3333 | 93.7500 | 89.5425 | 15 | 3 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 88.2353 | 83.3333 | 93.7500 | 91.0615 | 15 | 3 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 88.2353 | 83.3333 | 93.7500 | 91.1111 | 15 | 3 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.1111 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.3721 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8060 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.1163 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0851 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 100.0000 | 95.3560 | 0 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.2353 | 88.2353 | 88.2353 | 98.6625 | 15 | 2 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 97.8481 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 85.7143 | 83.3333 | 88.2353 | 98.6688 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 97.8589 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.6364 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.6364 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0106 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8134 | 15 | 1 | 15 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.6364 | 15 | 0 | 15 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.6364 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6636 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.8874 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 93.7500 | 78.9474 | 95.9227 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.5469 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 88.5496 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.3077 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.9564 | 15 | 1 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 91.5254 | 0 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 74.3034 | 61.5385 | 93.7500 | 78.0822 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 74.3034 | 61.5385 | 93.7500 | 81.3953 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 74.3034 | 61.5385 | 93.7500 | 81.6092 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | homalt | 78.9474 | 71.4286 | 88.2353 | 70.6897 | 15 | 6 | 15 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 54.5455 | 15 | 2 | 15 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 86.9565 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |