PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43701-43750 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 100.0000 | 86.6667 | 87.0690 | 12 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 77.1930 | 12 | 1 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 96.2963 | 100.0000 | 92.8571 | 99.1495 | 12 | 0 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 72.2222 | 95.4315 | 0 | 0 | 13 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.8750 | 0 | 0 | 13 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.6552 | 81.2500 | 100.0000 | 97.7816 | 13 | 3 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 89.6552 | 81.2500 | 100.0000 | 99.8895 | 13 | 3 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.8571 | 86.6667 | 100.0000 | 96.9412 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 33.3333 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.3295 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 96.2963 | 92.8571 | 100.0000 | 91.8750 | 13 | 1 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.5443 | 10 | 1 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 41.6667 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 93.4211 | 13 | 1 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 57.1429 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 94.7791 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 94.9219 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7254 | 13 | 0 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m1_e0 | * | 92.8571 | 86.6667 | 100.0000 | 93.9815 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 89.6552 | 86.6667 | 92.8571 | 94.6970 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | * | 89.6552 | 86.6667 | 92.8571 | 94.7170 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 90.0662 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.1765 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.5254 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 95.4064 | 13 | 1 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.2963 | 100.0000 | 92.8571 | 97.1074 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 86.6667 | 100.0000 | 84.7059 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.7647 | 13 | 0 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.6061 | 13 | 0 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 92.8571 | 86.6667 | 100.0000 | 91.0959 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 92.8571 | 86.6667 | 100.0000 | 92.0732 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 92.8571 | 86.6667 | 100.0000 | 92.3977 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.5000 | 12 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 92.8571 | 92.8571 | 92.8571 | 87.0370 | 13 | 1 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.0952 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.9091 | 60.0000 | 86.6667 | 81.7073 | 15 | 10 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 77.6119 | 66.6667 | 92.8571 | 66.6667 | 12 | 6 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 74.7126 | 62.5000 | 92.8571 | 77.0492 | 15 | 9 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.6667 | 84.6154 | 100.0000 | 71.1111 | 11 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 84.6512 | 77.7778 | 92.8571 | 70.8333 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | het | 89.6552 | 86.6667 | 92.8571 | 94.4444 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | het | 86.6667 | 76.4706 | 100.0000 | 85.7143 | 13 | 4 | 13 | 0 | 0 | ||