PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43601-43650 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 36.3636 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 86.4078 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | * | 83.8710 | 76.4706 | 92.8571 | 91.5663 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | het | 89.6552 | 81.2500 | 100.0000 | 85.5556 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | * | 81.2500 | 72.2222 | 92.8571 | 91.7160 | 13 | 5 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | het | 89.6552 | 81.2500 | 100.0000 | 85.7143 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 86.6667 | 100.0000 | 76.4706 | 60.4651 | 13 | 0 | 13 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0882 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.4651 | 56.5217 | 65.0000 | 70.1493 | 13 | 10 | 13 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.0000 | 59.0909 | 72.2222 | 68.4211 | 13 | 9 | 13 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 78.0488 | 64.0000 | 100.0000 | 56.6667 | 16 | 9 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | het | 78.5714 | 64.7059 | 100.0000 | 88.3929 | 11 | 6 | 13 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 85.5670 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 85.5670 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 32.0988 | 19.1176 | 100.0000 | 99.4775 | 13 | 55 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | het | 56.5217 | 39.3939 | 100.0000 | 99.4522 | 13 | 20 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | * | 82.9787 | 75.0000 | 92.8571 | 92.6316 | 6 | 2 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 93.5323 | 5 | 2 | 13 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.5556 | 1 | 0 | 13 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.8696 | 1 | 0 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 72.2222 | 65.0000 | 81.2500 | 99.5143 | 13 | 7 | 13 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 70.2703 | 54.1667 | 100.0000 | 92.8962 | 13 | 11 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 32.9114 | 19.6970 | 100.0000 | 90.5109 | 13 | 53 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 78.7879 | 65.0000 | 100.0000 | 60.6061 | 13 | 7 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 80.5970 | 12 | 4 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | homalt | 44.0678 | 28.2609 | 100.0000 | 98.6762 | 13 | 33 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | homalt | 89.6552 | 86.6667 | 92.8571 | 39.1304 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 68.4211 | 54.1667 | 92.8571 | 90.2098 | 13 | 11 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.5881 | 13 | 12 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.9066 | 13 | 12 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.2226 | 34.2857 | 81.2500 | 96.9811 | 12 | 23 | 13 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.0000 | 65.0000 | 65.0000 | 99.6383 | 13 | 7 | 13 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 61.9048 | 95.5696 | 0 | 0 | 13 | 8 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 35.1351 | 96.3330 | 0 | 0 | 13 | 24 | 3 | 12.5000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 32.5000 | 96.4093 | 0 | 0 | 13 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 61.9048 | 99.3151 | 0 | 0 | 13 | 8 | 3 | 37.5000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 74.2857 | 86.6667 | 65.0000 | 95.8932 | 13 | 2 | 13 | 7 | 2 | 28.5714 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 78.7879 | 92.8571 | 68.4211 | 95.6322 | 13 | 1 | 13 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m0_e0 | het | 83.8710 | 86.6667 | 81.2500 | 98.8131 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 7.1429 | 12 | 3 | 13 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 43.4783 | 11 | 1 | 13 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 83.5294 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 55.8824 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |