PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43551-43600 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 82.0513 | 84.2105 | 80.0000 | 94.6043 | 16 | 3 | 12 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 48.7085 | 36.0656 | 75.0000 | 57.8947 | 22 | 39 | 12 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 51.1073 | 48.0769 | 54.5455 | 60.7143 | 25 | 27 | 12 | 10 | 8 | 80.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | * | 71.8894 | 85.7143 | 61.9048 | 96.2298 | 6 | 1 | 13 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 70.2703 | 100.0000 | 54.1667 | 50.0000 | 13 | 0 | 13 | 11 | 7 | 63.6364 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5635 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.6061 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | homalt | 86.9565 | 76.9231 | 100.0000 | 98.1767 | 10 | 3 | 13 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 13.1980 | 7.2626 | 72.2222 | 76.0000 | 13 | 166 | 13 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | homalt | 4.7937 | 25.8065 | 2.6423 | 56.0714 | 8 | 23 | 13 | 479 | 433 | 90.3967 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 44.7761 | 28.8462 | 100.0000 | 76.3636 | 15 | 37 | 13 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 16.2560 | 11.4094 | 28.2609 | 78.7037 | 17 | 132 | 13 | 33 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 17.8082 | 19.6970 | 16.2500 | 98.7063 | 13 | 53 | 13 | 67 | 2 | 2.9851 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | hetalt | 81.2500 | 86.6667 | 76.4706 | 83.4951 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e0 | hetalt | 81.2500 | 86.6667 | 76.4706 | 85.8333 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e1 | hetalt | 81.2500 | 86.6667 | 76.4706 | 85.8333 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.4557 | 81.6279 | 0 | 0 | 13 | 66 | 6 | 9.0909 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 14.6893 | 100.0000 | 7.9268 | 78.0161 | 13 | 0 | 13 | 151 | 3 | 1.9868 | |
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | hetalt | 92.8571 | 92.8571 | 92.8571 | 89.3130 | 13 | 1 | 13 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 14.6893 | 100.0000 | 7.9268 | 78.0161 | 13 | 0 | 13 | 151 | 3 | 1.9868 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | homalt | 53.0612 | 39.3939 | 81.2500 | 71.9298 | 13 | 20 | 13 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | homalt | 0.6437 | 0.3236 | 59.0909 | 48.8372 | 1 | 308 | 13 | 9 | 6 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 36.1111 | 72.9323 | 0 | 66 | 13 | 23 | 11 | 47.8261 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | * | 68.3012 | 68.1818 | 68.4211 | 53.6585 | 15 | 7 | 13 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 26.6325 | 16.3265 | 72.2222 | 65.3846 | 8 | 41 | 13 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 18.8065 | 16.0000 | 22.8070 | 67.0520 | 12 | 63 | 13 | 44 | 41 | 93.1818 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 36.5768 | 92.3077 | 22.8070 | 64.5963 | 12 | 1 | 13 | 44 | 41 | 93.1818 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.4138 | 15.8537 | 38.2353 | 86.4000 | 13 | 69 | 13 | 21 | 13 | 61.9048 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.6811 | 0 | 0 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.8571 | 94.1667 | 0 | 0 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 11.2554 | 6.1611 | 65.0000 | 68.2540 | 13 | 198 | 13 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 87.8261 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | * | 83.2000 | 80.0000 | 86.6667 | 91.0180 | 12 | 3 | 13 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 42.6230 | 100.0000 | 27.0833 | 34.2466 | 13 | 0 | 13 | 35 | 31 | 88.5714 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 57.3529 | 42.8571 | 86.6667 | 94.8980 | 6 | 8 | 13 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 14.2857 | 7.6923 | 100.0000 | 45.8333 | 1 | 12 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | * | 35.9447 | 23.0769 | 81.2500 | 69.2308 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | * | 35.9447 | 23.0769 | 81.2500 | 72.8814 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | * | 35.9447 | 23.0769 | 81.2500 | 73.3333 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | homalt | 81.2500 | 68.4211 | 100.0000 | 81.1594 | 13 | 6 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 98.4010 | 0 | 0 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 98.3376 | 0 | 0 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 13.8298 | 27.6923 | 0 | 0 | 13 | 81 | 68 | 83.9506 | |