PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43151-43200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 12 | 3 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5806 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.0000 | 92.3077 | 100.0000 | 29.4118 | 12 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.6154 | 73.3333 | 100.0000 | 85.8824 | 11 | 4 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 81.4815 | 68.7500 | 100.0000 | 86.9565 | 11 | 5 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 81.4815 | 68.7500 | 100.0000 | 87.2340 | 11 | 5 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6084 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 52.0000 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.3333 | 87.5000 | 100.0000 | 68.4211 | 14 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e1 | het | 85.7143 | 75.0000 | 100.0000 | 91.3669 | 12 | 4 | 12 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 68.5714 | 52.1739 | 100.0000 | 94.6188 | 12 | 11 | 12 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.6087 | 12 | 1 | 12 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.3659 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.3659 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.6087 | 12 | 1 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4138 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.4729 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6759 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 85.7143 | 80.0000 | 92.3077 | 99.2499 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.6292 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 12 | 3 | 12 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.3333 | 12 | 1 | 12 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7711 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7711 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.6197 | 10 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 92.3077 | 95.7096 | 0 | 0 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.0784 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.5015 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.5714 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 97.5689 | 0 | 0 | 12 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7143 | 0 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 70.0000 | 11 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.7059 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 85.7143 | 80.0000 | 92.3077 | 91.6667 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.4528 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 52.0000 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.1639 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 67.7419 | 56.0000 | 85.7143 | 83.1325 | 14 | 11 | 12 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 71.4894 | 58.3333 | 92.3077 | 78.3333 | 14 | 10 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.9565 | 76.9231 | 100.0000 | 70.0000 | 10 | 3 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 77.4194 | 66.6667 | 92.3077 | 69.0476 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 77.4194 | 66.6667 | 92.3077 | 72.3404 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 77.4194 | 66.6667 | 92.3077 | 72.3404 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 67.5676 | 12 | 1 | 12 | 0 | 0 | ||