PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42651-42700 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4856 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9130 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.7828 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 97.0874 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 97.1014 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.9239 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9561 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9865 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0739 | 9 | 0 | 10 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 27.3141 | 19.1489 | 47.6190 | 61.1111 | 9 | 38 | 10 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 24.3902 | 79.5000 | 0 | 1 | 10 | 31 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | * | het | 31.2500 | 100.0000 | 18.5185 | 88.2096 | 7 | 0 | 10 | 44 | 5 | 11.3636 | |
| anovak-vg | INDEL | C6_15 | HG002complexvar | * | 55.5556 | 100.0000 | 38.4615 | 87.1287 | 4 | 0 | 10 | 16 | 4 | 25.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | homalt | 83.6502 | 91.6667 | 76.9231 | 91.8750 | 11 | 1 | 10 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | het | 77.7385 | 78.5714 | 76.9231 | 96.9697 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | het | 77.7385 | 78.5714 | 76.9231 | 97.0455 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9166 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.7480 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.5157 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8718 | 11 | 0 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.3366 | 11 | 0 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 90.9836 | 11 | 1 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.9541 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8695 | 11 | 0 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4167 | 11 | 0 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8741 | 11 | 0 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 91.6667 | 84.6154 | 100.0000 | 62.0690 | 11 | 2 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.5517 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.8504 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 53.6585 | 36.6667 | 100.0000 | 89.6226 | 11 | 19 | 11 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 16.4179 | 84.3091 | 0 | 0 | 11 | 56 | 3 | 5.3571 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 13.9241 | 82.0455 | 0 | 0 | 11 | 68 | 4 | 5.8824 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.7059 | 73.3333 | 57.8947 | 97.5734 | 11 | 4 | 11 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 29.8913 | 21.7391 | 47.8261 | 39.4737 | 10 | 36 | 11 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | * | 52.3810 | 39.2857 | 78.5714 | 92.5532 | 11 | 17 | 11 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 91.4286 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 30.6087 | 21.6216 | 52.3810 | 47.5000 | 8 | 29 | 11 | 10 | 3 | 30.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.3105 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 96.4088 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 72.5000 | 11 | 2 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 42.1053 | 10 | 2 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 91.2000 | 11 | 1 | 11 | 0 | 0 | ||