PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42601-42650 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 7.3529 | 85.0549 | 0 | 0 | 10 | 126 | 4 | 3.1746 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 90.9091 | 95.6175 | 0 | 0 | 10 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 20.0000 | 96.0254 | 0 | 0 | 10 | 40 | 3 | 7.5000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1977 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4158 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4539 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.4301 | 0 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 19.2308 | 81.4947 | 0 | 0 | 10 | 42 | 4 | 9.5238 | |
| gduggal-snapvard | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 52.6316 | 96.6841 | 0 | 0 | 10 | 9 | 1 | 11.1111 | |
| gduggal-snapfb | INDEL | C6_15 | * | het | 75.0000 | 85.7143 | 66.6667 | 94.0945 | 6 | 1 | 10 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | * | 70.5882 | 75.0000 | 66.6667 | 92.2280 | 3 | 1 | 10 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.4366 | 10 | 1 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4104 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 69.4006 | 59.4595 | 83.3333 | 67.5676 | 22 | 15 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.1667 | 53.8462 | 20.0000 | 79.3388 | 7 | 6 | 10 | 40 | 13 | 32.5000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 31.2500 | 21.2766 | 58.8235 | 98.2528 | 10 | 37 | 10 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | * | 60.1093 | 57.8947 | 62.5000 | 76.8116 | 11 | 8 | 10 | 6 | 1 | 16.6667 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 42.5532 | 30.3030 | 71.4286 | 87.1560 | 10 | 23 | 10 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 71.0383 | 61.9048 | 83.3333 | 36.8421 | 13 | 8 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | het | 45.7143 | 34.7826 | 66.6667 | 96.1340 | 16 | 30 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | het | 45.0704 | 34.0426 | 66.6667 | 96.1637 | 16 | 31 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.0476 | 12.1951 | 43.4783 | 96.2480 | 10 | 72 | 10 | 13 | 4 | 30.7692 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m0_e0 | het | 68.9655 | 66.6667 | 71.4286 | 99.2802 | 10 | 5 | 10 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 37.8549 | 24.4898 | 83.3333 | 85.3659 | 12 | 37 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | homalt | 33.4855 | 23.4043 | 58.8235 | 93.4109 | 11 | 36 | 10 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | homalt | 66.9856 | 77.7778 | 58.8235 | 97.3725 | 7 | 2 | 10 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | tech_badpromoters | homalt | 72.8745 | 69.2308 | 76.9231 | 40.9091 | 9 | 4 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | het | 51.9481 | 44.4444 | 62.5000 | 88.7324 | 4 | 5 | 10 | 6 | 1 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | het | 54.4218 | 53.3333 | 55.5556 | 90.8163 | 8 | 7 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | het | 54.4218 | 53.3333 | 55.5556 | 91.7431 | 8 | 7 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | het | 52.6316 | 50.0000 | 55.5556 | 91.9283 | 8 | 8 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.0741 | 66.6667 | 83.3333 | 95.0000 | 10 | 5 | 10 | 2 | 1 | 50.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.2984 | 70.0000 | 76.9231 | 96.4674 | 7 | 3 | 10 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9347 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4947 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 97.9554 | 10 | 2 | 10 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9236 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.2197 | 10 | 2 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 95.2381 | 90.9091 | 100.0000 | 97.9592 | 10 | 1 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.3810 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 78.2609 | 10 | 2 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.2500 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0317 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 92.0000 | 10 | 2 | 10 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.2381 | 100.0000 | 90.9091 | 95.2790 | 9 | 0 | 10 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 51.2821 | 34.4828 | 100.0000 | 89.3617 | 10 | 19 | 10 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9337 | 10 | 0 | 10 | 0 | 0 | ||