PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42551-42600 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.8453 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.7849 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.2382 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.5909 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 96.6102 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.8584 | 10 | 1 | 10 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.7893 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 96.6463 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.0270 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.0430 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7082 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 95.7692 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.2679 | 10 | 1 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 60.0000 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | het | 95.2381 | 100.0000 | 90.9091 | 47.6190 | 10 | 0 | 10 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 61.5385 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 90.9091 | 90.9091 | 90.9091 | 75.0000 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 96.4392 | 10 | 0 | 10 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.7406 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 72.2222 | 10 | 2 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.2381 | 90.9091 | 100.0000 | 94.1860 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m1_e0 | * | 95.2381 | 90.9091 | 100.0000 | 94.3182 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m2_e0 | * | 95.2381 | 90.9091 | 100.0000 | 95.0980 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m2_e1 | * | 95.2381 | 90.9091 | 100.0000 | 95.1220 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | * | 71.4286 | 66.6667 | 76.9231 | 86.8687 | 10 | 5 | 10 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | hetalt | 82.7740 | 82.2222 | 83.3333 | 86.0465 | 37 | 8 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | tech_badpromoters | het | 34.2146 | 28.2051 | 43.4783 | 84.7682 | 11 | 28 | 10 | 13 | 1 | 7.6923 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | homalt | 42.1053 | 26.6667 | 100.0000 | 83.8710 | 4 | 11 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | * | 45.4545 | 50.0000 | 41.6667 | 93.4426 | 4 | 4 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | het | 54.7945 | 80.0000 | 41.6667 | 92.9412 | 4 | 1 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | * | 45.4545 | 50.0000 | 41.6667 | 93.7008 | 4 | 4 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | het | 54.7945 | 80.0000 | 41.6667 | 93.2203 | 4 | 1 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | tech_badpromoters | * | 63.3484 | 53.8462 | 76.9231 | 60.6061 | 7 | 6 | 10 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.5000 | 58.8235 | 66.6667 | 99.8072 | 10 | 7 | 10 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | segdup | homalt | 90.9091 | 83.3333 | 100.0000 | 93.6306 | 10 | 2 | 10 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 89.0909 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | homalt | 86.9565 | 76.9231 | 100.0000 | 62.9630 | 10 | 3 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9270 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.2381 | 100.0000 | 90.9091 | 99.3176 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 38.4615 | 28.5714 | 58.8235 | 98.1006 | 10 | 25 | 10 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 7.3529 | 85.3132 | 0 | 0 | 10 | 126 | 4 | 3.1746 | |