PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42301-42350 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I16_PLUS | func_cds | * | 77.1930 | 91.6667 | 66.6667 | 67.3913 | 11 | 1 | 10 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 36.3636 | 25.0000 | 66.6667 | 96.8750 | 2 | 6 | 10 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 56.6038 | 42.8571 | 83.3333 | 90.4762 | 3 | 4 | 10 | 2 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m0_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 89.8990 | 10 | 4 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9200 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2816 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 94.2197 | 10 | 1 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 62.5000 | 71.4286 | 74.5455 | 5 | 3 | 10 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3031 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 86.9565 | 76.9231 | 100.0000 | 96.0784 | 10 | 3 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.0557 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.2973 | 11 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 44.4444 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 83.3333 | 10 | 6 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7320 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1591 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1860 | 9 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 56.5217 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 66.6667 | 52.6316 | 90.9091 | 71.7949 | 10 | 9 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 77.2727 | 10 | 2 | 10 | 0 | 0 | ||
| mlin-fermikit | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 37.5000 | 10 | 0 | 10 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 37.5000 | 10 | 0 | 10 | 0 | 0 | ||
| jli-custom | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| jli-custom | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9727 | 10 | 0 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4903 | 10 | 0 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.7082 | 10 | 1 | 10 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 88.7850 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 17.0940 | 41.6667 | 10.7527 | 42.2360 | 10 | 14 | 10 | 83 | 83 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l250_m1_e0 | het | 90.9091 | 90.9091 | 90.9091 | 97.2569 | 10 | 1 | 10 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 46.5116 | 43.4783 | 50.0000 | 85.0746 | 10 | 13 | 10 | 10 | 9 | 90.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 47.6190 | 45.4545 | 50.0000 | 81.1321 | 10 | 12 | 10 | 10 | 9 | 90.0000 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | homalt | 86.9565 | 76.9231 | 100.0000 | 64.2857 | 10 | 3 | 10 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 97.8038 | 10 | 0 | 10 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 96.5278 | 8 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 90.9091 | 95.7692 | 0 | 0 | 10 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 90.4348 | 10 | 2 | 10 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.0868 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.1671 | 11 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m1_e0 | het | 95.2381 | 90.9091 | 100.0000 | 93.9394 | 10 | 1 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 82.1429 | 10 | 6 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 95.5645 | 9 | 0 | 10 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5398 | 9 | 0 | 10 | 0 | 0 | ||