PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41201-41250 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 69.5652 | 80.0000 | 61.5385 | 98.1429 | 8 | 2 | 8 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.1220 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.0299 | 8 | 1 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 8 | 0 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.1992 | 8 | 0 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 47.0588 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 46.6667 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 8 | 0 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 77.7778 | 63.6364 | 100.0000 | 87.8788 | 7 | 4 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 58.8235 | 41.6667 | 100.0000 | 70.3704 | 5 | 7 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | * | 42.1053 | 66.6667 | 30.7692 | 92.3754 | 8 | 4 | 8 | 18 | 2 | 11.1111 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 76.1905 | 61.5385 | 100.0000 | 92.1569 | 8 | 5 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | * | 50.6787 | 38.8889 | 72.7273 | 93.4524 | 7 | 11 | 8 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | * | 43.0769 | 31.8182 | 66.6667 | 94.2308 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | * | 43.0769 | 31.8182 | 66.6667 | 94.3396 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | het | 88.8889 | 80.0000 | 100.0000 | 52.9412 | 8 | 2 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 66.6667 | 8 | 1 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 78.3784 | 8 | 0 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 39.0244 | 32.0000 | 50.0000 | 68.0000 | 8 | 17 | 8 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 8 | 0 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | homalt | 59.2593 | 53.3333 | 66.6667 | 87.7551 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | homalt | 59.2593 | 53.3333 | 66.6667 | 89.1892 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | homalt | 59.2593 | 53.3333 | 66.6667 | 89.7436 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.8889 | 88.8889 | 88.8889 | 96.8421 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | * | hetalt | 72.7273 | 100.0000 | 57.1429 | 96.7890 | 1 | 0 | 8 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 93.9394 | 0 | 0 | 8 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 80.0000 | 98.8318 | 0 | 0 | 8 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | het | 61.5385 | 100.0000 | 44.4444 | 68.4211 | 8 | 0 | 8 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 9 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 54.0541 | 83.3333 | 40.0000 | 98.5795 | 5 | 1 | 8 | 12 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | func_cds | het | 88.8889 | 100.0000 | 80.0000 | 61.5385 | 9 | 0 | 8 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 78.2609 | 64.2857 | 100.0000 | 80.4878 | 18 | 10 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 42.4779 | 75.0000 | 29.6296 | 79.2308 | 3 | 1 | 8 | 19 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 61.5385 | 66.6667 | 57.1429 | 92.6316 | 4 | 2 | 8 | 6 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D6_15 | tech_badpromoters | het | 84.2105 | 80.0000 | 88.8889 | 59.0909 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.1353 | 8 | 1 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 45.0000 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | het | 57.1429 | 53.3333 | 61.5385 | 94.3723 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | het | 57.1429 | 53.3333 | 61.5385 | 95.0758 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 55.1724 | 50.0000 | 61.5385 | 95.2727 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 100.0000 | 88.8889 | 97.0492 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.9697 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 59.2593 | 100.0000 | 42.1053 | 67.7966 | 8 | 0 | 8 | 11 | 11 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.6606 | 8 | 1 | 8 | 0 | 0 | ||