PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40901-40950 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 93.2692 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m2_e0 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l125_m2_e1 | hetalt | 37.8378 | 23.3333 | 100.0000 | 94.6970 | 7 | 23 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.1348 | 6 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 87.0370 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 97.4922 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.3158 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.8529 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3982 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3982 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l125_m0_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 95.6790 | 7 | 4 | 7 | 0 | 0 | ||
| ciseli-custom | SNP | ti | func_cds | hetalt | 93.3333 | 87.5000 | 100.0000 | 41.6667 | 7 | 1 | 7 | 0 | 0 | ||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 39.5480 | 83.3333 | 25.9259 | 83.4356 | 5 | 1 | 7 | 20 | 1 | 5.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 65.1163 | 66.6667 | 63.6364 | 84.7222 | 2 | 1 | 7 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 63.6364 | 84.7222 | 0 | 0 | 7 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 50.0000 | 96.5347 | 0 | 0 | 7 | 7 | 4 | 57.1429 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 100.0000 | 93.6364 | 0 | 0 | 7 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 77.7778 | 92.8571 | 0 | 0 | 7 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 77.7778 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.2880 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 94.2308 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 92.5234 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 96.8254 | 6 | 0 | 7 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 16.2791 | 95.0575 | 0 | 0 | 7 | 36 | 6 | 16.6667 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 63.6364 | 98.2972 | 0 | 0 | 7 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 15.2174 | 95.9578 | 0 | 0 | 7 | 39 | 10 | 25.6410 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 46.4088 | 31.5789 | 87.5000 | 93.2773 | 6 | 13 | 7 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 60.8696 | 46.6667 | 87.5000 | 96.0784 | 7 | 8 | 7 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.6937 | 7 | 7 | 7 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 63.6364 | 70.0000 | 99.4592 | 7 | 4 | 7 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 73.6842 | 70.0000 | 77.7778 | 99.4813 | 7 | 3 | 7 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | segdup | * | 21.9321 | 12.7660 | 77.7778 | 96.3415 | 6 | 41 | 7 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 34.1463 | 29.1667 | 41.1765 | 98.8591 | 7 | 17 | 7 | 10 | 5 | 50.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 25.4545 | 15.5556 | 70.0000 | 98.0198 | 7 | 38 | 7 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 86.1702 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.6190 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.8505 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ckim-dragen | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.8365 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.2810 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8854 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.0704 | 7 | 0 | 7 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 7 | 0 | 7 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7761 | 7 | 0 | 7 | 0 | 0 | ||
| ciseli-custom | INDEL | * | decoy | * | 77.7778 | 70.0000 | 87.5000 | 99.9456 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |