PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40601-40650 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 80.0000 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 80.5556 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 84.2105 | 72.7273 | 100.0000 | 81.0811 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 90.2439 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 91.9192 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 41.6667 | 6 | 1 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1579 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.4074 | 8 | 0 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 96.7593 | 0 | 0 | 7 | 14 | 5 | 35.7143 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 88.5246 | 0 | 0 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 58.3333 | 96.3526 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 58.3333 | 96.4706 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 73.6842 | 100.0000 | 58.3333 | 95.6364 | 7 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 73.6842 | 100.0000 | 58.3333 | 95.1417 | 7 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 93.3333 | 100.0000 | 87.5000 | 99.5874 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 7.0352 | 3.6458 | 100.0000 | 78.1250 | 7 | 185 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.5000 | 87.5000 | 87.5000 | 50.0000 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.5405 | 4 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 41.6667 | 6 | 1 | 7 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.0513 | 1 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 86.2745 | 0 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 45.4277 | 64.7059 | 35.0000 | 94.0828 | 11 | 6 | 7 | 13 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | decoy | * | 82.3529 | 70.0000 | 100.0000 | 99.9638 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | * | het | 88.1890 | 88.8889 | 87.5000 | 96.5368 | 8 | 1 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | het | 93.3333 | 100.0000 | 87.5000 | 97.5831 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 70.0000 | 53.8462 | 100.0000 | 75.0000 | 7 | 6 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.4110 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 63.6364 | 46.6667 | 100.0000 | 94.1176 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 91.7647 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 63.6364 | 46.6667 | 100.0000 | 94.8905 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.0455 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 63.6364 | 46.6667 | 100.0000 | 95.1389 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | het | 63.6364 | 46.6667 | 100.0000 | 98.2368 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | het | 63.6364 | 46.6667 | 100.0000 | 98.4581 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1771 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | func_cds | hetalt | 93.3333 | 87.5000 | 100.0000 | 56.2500 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 60.8696 | 43.7500 | 100.0000 | 99.2299 | 7 | 9 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | hetalt | 63.6364 | 46.6667 | 100.0000 | 92.4731 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | hetalt | 63.6364 | 46.6667 | 100.0000 | 93.7500 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | hetalt | 63.6364 | 46.6667 | 100.0000 | 93.8053 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 96.5217 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1771 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.0256 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4731 | 8 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.1392 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7835 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 58.8235 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.5975 | 8 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9027 | 7 | 0 | 7 | 0 | 0 | ||