PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40101-40150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 79.4118 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 75.0000 | 98.7441 | 0 | 0 | 6 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 76.9231 | 0 | 0 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | * | 92.3077 | 85.7143 | 100.0000 | 93.2584 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m0_e0 | het | 92.3077 | 85.7143 | 100.0000 | 87.7551 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.5957 | 69.2308 | 85.7143 | 83.7209 | 27 | 12 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 85.7143 | 100.0000 | 75.0000 | 99.8385 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 96.6019 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | homalt | 92.3077 | 100.0000 | 85.7143 | 53.3333 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | func_cds | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 57.1429 | 40.0000 | 100.0000 | 68.4211 | 14 | 21 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 70.9677 | 55.0000 | 100.0000 | 53.8462 | 11 | 9 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | * | 37.5000 | 23.0769 | 100.0000 | 84.2105 | 6 | 20 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | * | 37.5000 | 23.0769 | 100.0000 | 86.3636 | 6 | 20 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e1 | * | 37.5000 | 23.0769 | 100.0000 | 86.6667 | 6 | 20 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1220 | 9 | 0 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.0000 | 53.8462 | 100.0000 | 53.8462 | 7 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 14.2857 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 86.7925 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 94.8718 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 95.3947 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 95.6522 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 85.7143 | 100.0000 | 75.0000 | 97.3422 | 7 | 0 | 6 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 88.3333 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7914 | 6 | 0 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | homalt | 38.7097 | 24.0000 | 100.0000 | 99.3555 | 6 | 19 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | het | 80.0000 | 75.0000 | 85.7143 | 76.6667 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | * | 66.6667 | 50.0000 | 100.0000 | 98.1651 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8276 | 6 | 3 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | het | 63.1579 | 50.0000 | 85.7143 | 93.1373 | 2 | 2 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9950 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 63.1579 | 100.0000 | 46.1538 | 96.7581 | 9 | 0 | 6 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 85.7143 | 93.5185 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C1_5 | HG002complexvar | * | 92.3077 | 85.7143 | 100.0000 | 95.1220 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | HG002complexvar | het | 92.3077 | 85.7143 | 100.0000 | 91.7808 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.1901 | 87.5000 | 3.2086 | 48.1994 | 7 | 1 | 6 | 181 | 181 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | het | 75.0000 | 75.0000 | 75.0000 | 52.9412 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | het | 46.1538 | 30.0000 | 100.0000 | 99.1004 | 6 | 14 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0000 | 42.8571 | 100.0000 | 99.2126 | 6 | 8 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | het | 60.0000 | 42.8571 | 100.0000 | 99.2288 | 6 | 8 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | tech_badpromoters | het | 75.0000 | 60.0000 | 100.0000 | 68.4211 | 6 | 4 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 34.2857 | 24.0000 | 60.0000 | 90.6542 | 6 | 19 | 6 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 36.3636 | 25.0000 | 66.6667 | 85.2459 | 6 | 18 | 6 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 57.1429 | 40.0000 | 100.0000 | 91.3043 | 6 | 9 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.6783 | 6 | 18 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 63.1579 | 46.1538 | 100.0000 | 78.5714 | 6 | 7 | 6 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 94.8276 | 6 | 10 | 6 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 94.8276 | 6 | 10 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | decoy | het | 78.9474 | 83.3333 | 75.0000 | 99.9698 | 5 | 1 | 6 | 2 | 1 | 50.0000 | |