PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39851-39900 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 93.2584 | 7 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 70.0000 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.8970 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | homalt | 7.6994 | 87.5000 | 4.0268 | 56.6860 | 7 | 1 | 6 | 143 | 142 | 99.3007 | |
| mlin-fermikit | INDEL | D16_PLUS | decoy | * | 92.3077 | 100.0000 | 85.7143 | 99.0085 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 6 | 3 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 92.9412 | 4 | 5 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 99.1379 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 92.3077 | 85.7143 | 100.0000 | 99.0964 | 6 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 6 | 0 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 85.7143 | 85.7143 | 85.7143 | 96.9298 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.5000 | 77.7778 | 100.0000 | 96.2733 | 7 | 2 | 6 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.0811 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5882 | 60.0000 | 85.7143 | 97.7492 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 83.7838 | 6 | 2 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 14 | 7 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 4.7244 | 81.1852 | 0 | 0 | 6 | 121 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 18.1818 | 81.8681 | 0 | 0 | 6 | 27 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 10.5263 | 92.2343 | 0 | 0 | 6 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 10.5263 | 92.2343 | 0 | 0 | 6 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 85.7143 | 96.7290 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.4497 | 0 | 0 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6102 | 0 | 0 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 85.7143 | 93.4579 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 66.6667 | 95.3846 | 0 | 1 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 75.0000 | 98.8604 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 96.3934 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.1856 | 100.0000 | 3.1915 | 36.2712 | 8 | 0 | 6 | 182 | 92 | 50.5495 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 60.0000 | 100.0000 | 42.8571 | 98.8553 | 7 | 0 | 6 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.6674 | 10 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 77.9221 | 71.4286 | 85.7143 | 94.8905 | 5 | 2 | 6 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 5.3812 | 100.0000 | 2.7650 | 59.0566 | 3 | 0 | 6 | 211 | 173 | 81.9905 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 72.2222 | 56.5217 | 100.0000 | 76.0000 | 13 | 10 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 93.2836 | 3 | 0 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 74.0741 | 83.3333 | 66.6667 | 94.6108 | 5 | 1 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | het | 69.7674 | 83.3333 | 60.0000 | 94.2857 | 5 | 1 | 6 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | het | 69.7674 | 83.3333 | 60.0000 | 94.3182 | 5 | 1 | 6 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 95.0820 | 5 | 4 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 36.3636 | 25.0000 | 66.6667 | 97.5936 | 1 | 3 | 6 | 3 | 1 | 33.3333 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.5882 | 66.6667 | 75.0000 | 98.1043 | 6 | 3 | 6 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 98.3146 | 6 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1039 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9259 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8421 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 98.8571 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5207 | 6 | 0 | 6 | 0 | 0 | ||