PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39751-39800 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.1667 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.8049 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9534 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.7715 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5278 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.5986 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.0455 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 92.3077 | 85.7143 | 100.0000 | 99.2258 | 6 | 1 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.1538 | 6 | 1 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.3333 | 6 | 1 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7056 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.4762 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.0831 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3636 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4072 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 6 | 2 | 6 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 95.9732 | 6 | 2 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 98.9565 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.9849 | 6 | 2 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.1783 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.7569 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.9388 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8718 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 94.4954 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | homalt | 80.0000 | 75.0000 | 85.7143 | 94.8148 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.4198 | 6 | 1 | 6 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.7143 | 100.0000 | 75.0000 | 91.1111 | 6 | 0 | 6 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 97.7564 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1333 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1771 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.4783 | 6 | 3 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 90.7692 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 92.0000 | 0 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 85.7143 | 97.5779 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 97.8495 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.0000 | 66.6667 | 85.7143 | 95.2055 | 6 | 3 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 75.0000 | 85.7143 | 78.7879 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |