PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38601-38650 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2617 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 98.0545 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4426 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 88.8889 | 80.0000 | 100.0000 | 99.5708 | 4 | 1 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6451 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 70.5882 | 75.0000 | 66.6667 | 89.4737 | 6 | 2 | 4 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 89.3617 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.6989 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3684 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.2603 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.3333 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 80.0000 | 57.1429 | 98.2278 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 80.0000 | 57.1429 | 98.2412 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | decoy | * | 80.0000 | 100.0000 | 66.6667 | 99.9631 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7401 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.9730 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1905 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 44.4444 | 80.0000 | 96.3768 | 4 | 5 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.7169 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.4469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.5155 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.4684 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 88.8889 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.8586 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3510 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8763 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.6526 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4426 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.1150 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 98.9583 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 98.9305 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 95.0355 | 4 | 1 | 4 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.2687 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.7742 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8750 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |