PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38351-38400 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.7480 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 94.2029 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 7.6190 | 4.5977 | 22.2222 | 91.6667 | 4 | 83 | 4 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 10.3004 | 6.3830 | 26.6667 | 77.2727 | 3 | 44 | 4 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 34.7826 | 23.5294 | 66.6667 | 93.8776 | 4 | 13 | 4 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2857 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 50.0000 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 80.0000 | 80.0000 | 99.5362 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4791 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6572 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6526 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.9920 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 98.2301 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9751 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3607 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.5507 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 4 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 97.2973 | 5 | 2 | 4 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 4 | 2 | 4 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.6327 | 83.3333 | 80.0000 | 90.0000 | 5 | 1 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9611 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 40.0000 | 95.9016 | 0 | 0 | 4 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 26.6667 | 96.0212 | 0 | 0 | 4 | 11 | 6 | 54.5455 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 28.5714 | 95.2862 | 0 | 0 | 4 | 10 | 6 | 60.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 96.8750 | 0 | 0 | 4 | 8 | 3 | 37.5000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 94.8276 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 91.0714 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.4762 | 3 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 80.0000 | 44.4444 | 96.7742 | 4 | 1 | 4 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0707 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9714 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.9381 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.1982 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.9899 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.0488 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.6190 | 4 | 1 | 4 | 0 | 0 | ||