PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38251-38300 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 96.2687 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 80.0000 | 96.2121 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.4528 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9825 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9825 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 88.8889 | 80.0000 | 100.0000 | 95.1807 | 4 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 88.8889 | 80.0000 | 100.0000 | 95.3488 | 4 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.8566 | 2 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.5765 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.6971 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 80.0000 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 72.7273 | 66.6667 | 80.0000 | 81.4815 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 72.7273 | 66.6667 | 80.0000 | 81.4815 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 50.0000 | 4 | 1 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5992 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.2063 | 4 | 2 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.5185 | 4 | 2 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.5507 | 4 | 2 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6406 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.5000 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4865 | 4 | 0 | 4 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.2301 | 4 | 0 | 4 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | homalt | 72.7273 | 66.6667 | 80.0000 | 85.7143 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 91.8033 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 57.1429 | 50.0000 | 66.6667 | 96.8912 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 57.1429 | 50.0000 | 66.6667 | 97.0443 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 98.8506 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0602 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0366 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 88.8889 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 95.6204 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0414 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9281 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3193 | 4 | 3 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.4962 | 4 | 3 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.0803 | 4 | 0 | 4 | 0 | 0 | ||