PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37901-37950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.7033 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 96.7391 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 42.8571 | 90.6667 | 0 | 0 | 3 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 37.5000 | 90.5882 | 0 | 0 | 3 | 5 | 2 | 40.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9297 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9388 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.8102 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.4783 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.4783 | 3 | 1 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 97.9079 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9866 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8571 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m1_e0 | * | 19.3548 | 11.1111 | 75.0000 | 97.5309 | 3 | 24 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e0 | * | 19.3548 | 11.1111 | 75.0000 | 97.8378 | 3 | 24 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | * | 18.7500 | 10.7143 | 75.0000 | 97.8610 | 3 | 25 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 97.3510 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 97.3856 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.0892 | 4 | 3 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3696 | 4 | 3 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 96.8421 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | het | 25.0000 | 15.0000 | 75.0000 | 97.9695 | 3 | 17 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.6667 | 3 | 2 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | het | 40.0000 | 27.2727 | 75.0000 | 98.0952 | 3 | 8 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | het | 33.3333 | 21.4286 | 75.0000 | 98.3607 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | het | 33.3333 | 21.4286 | 75.0000 | 98.3806 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.7143 | 75.0000 | 100.0000 | 81.2500 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | map_siren | het | 11.3208 | 6.1224 | 75.0000 | 96.9466 | 3 | 46 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.5882 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.4286 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5418 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.1053 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 98.4906 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e0 | het | 85.7143 | 100.0000 | 75.0000 | 98.7578 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m2_e1 | het | 85.7143 | 100.0000 | 75.0000 | 98.7730 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8873 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.3333 | 100.0000 | 4.3478 | 72.9412 | 3 | 0 | 3 | 66 | 66 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 75.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 2 | 0 | 3 | 0 | 0 | ||