PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37501-37550 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 94.0000 | 3 | 4 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 95.0820 | 3 | 4 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 46.1538 | 42.8571 | 50.0000 | 97.7358 | 3 | 4 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 54.5455 | 60.0000 | 50.0000 | 97.7941 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 54.5455 | 60.0000 | 50.0000 | 97.8873 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9263 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 18.7500 | 30.0000 | 13.6364 | 98.7945 | 3 | 7 | 3 | 19 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 90.5660 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1860 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 25.0000 | 74.4681 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 25.0000 | 73.9130 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 33.3333 | 85.7143 | 0 | 0 | 3 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 27.2727 | 99.8437 | 0 | 0 | 3 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 27.2727 | 99.8229 | 0 | 0 | 3 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 60.0000 | 89.5833 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 78.5714 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 30.0000 | 96.9880 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 30.0000 | 97.2452 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 30.0000 | 97.3333 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 25.0000 | 97.6285 | 0 | 0 | 3 | 9 | 3 | 33.3333 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 1.1019 | 0.5540 | 100.0000 | 82.3529 | 2 | 359 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 1.4925 | 0.7519 | 100.0000 | 83.3333 | 3 | 396 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 91.0448 | 3 | 9 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 3 | 6 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 54.5455 | 42.8571 | 75.0000 | 89.1892 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 54.5455 | 42.8571 | 75.0000 | 88.2353 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 31.5789 | 20.0000 | 75.0000 | 94.3662 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 33.3333 | 21.4286 | 75.0000 | 94.0299 | 3 | 11 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 95.3488 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 30.0000 | 18.7500 | 75.0000 | 95.0617 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 95.4023 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | het | 30.0000 | 18.7500 | 75.0000 | 95.1220 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | decoy | het | 85.7143 | 100.0000 | 75.0000 | 99.9649 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 95.3488 | 1 | 0 | 3 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 42.8571 | 96.1538 | 0 | 0 | 3 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 37.5000 | 95.8333 | 0 | 0 | 3 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9653 | 4 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 81.2500 | 68.4211 | 100.0000 | 82.3529 | 13 | 6 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 81.2500 | 68.4211 | 100.0000 | 83.3333 | 13 | 6 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 78.7879 | 65.0000 | 100.0000 | 85.0000 | 13 | 7 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m0_e0 | * | 66.6667 | 50.0000 | 100.0000 | 98.1250 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 66.6667 | 60.0000 | 75.0000 | 97.4684 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | homalt | 60.0000 | 50.0000 | 75.0000 | 97.7143 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |