PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37451-37500 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | * | 50.0000 | 37.5000 | 75.0000 | 95.5556 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | * | 50.0000 | 37.5000 | 75.0000 | 95.8333 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 80.0000 | 3 | 13 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4286 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 80.0000 | 3 | 13 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9319 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5000 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 3.6810 | 100.0000 | 1.8750 | 78.4657 | 3 | 0 | 3 | 157 | 3 | 1.9108 | |
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 3.6810 | 100.0000 | 1.8750 | 78.4657 | 3 | 0 | 3 | 157 | 3 | 1.9108 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | hetalt | 30.3797 | 19.0476 | 75.0000 | 99.4778 | 4 | 17 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | hetalt | 30.3797 | 19.0476 | 75.0000 | 99.5338 | 4 | 17 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 7.0640 | 3.6613 | 100.0000 | 80.0000 | 16 | 421 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 94.2308 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.5455 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.5455 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | func_cds | * | 0.0000 | 0.0000 | 60.0000 | 61.5385 | 0 | 12 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | func_cds | het | 0.0000 | 0.0000 | 60.0000 | 58.3333 | 0 | 9 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 92.6829 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 93.0233 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 37.5000 | 95.8549 | 0 | 1 | 3 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 37.5000 | 95.5056 | 0 | 0 | 3 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7030 | 71.4286 | 18.7500 | 96.3218 | 5 | 2 | 3 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.7647 | 30.0000 | 7.3171 | 96.1754 | 3 | 7 | 3 | 38 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 97.0516 | 6 | 2 | 3 | 9 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9196 | 3 | 0 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 66.6667 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 35.2941 | 23.0769 | 75.0000 | 69.2308 | 3 | 10 | 3 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4094 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4152 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 99.4152 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 99.5155 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 99.2212 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 99.2504 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 99.2548 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9798 | 3 | 1 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 97.9522 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.5904 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002compoundhet | homalt | 7.5000 | 100.0000 | 3.8961 | 67.2340 | 3 | 0 | 3 | 74 | 73 | 98.6486 | |