PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37301-37350 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 78.9474 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 80.9524 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 75.0000 | 75.0000 | 75.0000 | 80.9524 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | * | 54.5455 | 60.0000 | 50.0000 | 95.0820 | 3 | 2 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e1 | * | 54.5455 | 60.0000 | 50.0000 | 95.1613 | 3 | 2 | 3 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 4 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.2727 | 62.9630 | 100.0000 | 93.6170 | 17 | 10 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9072 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 96.8254 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.3396 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5455 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.2603 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5882 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7143 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 97.6190 | 8 | 3 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.7444 | 5 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.7778 | 5 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 16.6667 | 93.4307 | 0 | 0 | 3 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.8912 | 0 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.8276 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.2167 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.2683 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.3421 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 99.3562 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 99.3363 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 50.0000 | 99.3143 | 0 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 96.6292 | 0 | 0 | 3 | 0 | 0 | ||