PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36301-36350 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.7315 | 1 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.7218 | 1 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 81.8182 | 0 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1982 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6014 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.8725 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.4398 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.2973 | 2 | 2 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 10.5263 | 100.0000 | 5.5556 | 77.5000 | 2 | 0 | 2 | 34 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 14.2857 | 100.0000 | 7.6923 | 79.6875 | 2 | 0 | 2 | 24 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.0526 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 21.0526 | 100.0000 | 11.7647 | 81.7204 | 2 | 0 | 2 | 15 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 40.0000 | 40.0000 | 40.0000 | 99.5421 | 2 | 3 | 2 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 44.4444 | 50.0000 | 40.0000 | 99.5327 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 28.5714 | 81.0811 | 0 | 0 | 2 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 13.3333 | 86.7257 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 84.9057 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 92.5926 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 91.3043 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 91.1765 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 28.5714 | 96.7442 | 0 | 0 | 2 | 5 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 28.5714 | 97.1193 | 0 | 0 | 2 | 5 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 28.5714 | 97.1311 | 0 | 0 | 2 | 5 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.7143 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.9487 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 50.0000 | 97.9592 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.4194 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.6471 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 50.0000 | 97.6608 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7528 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | decoy | het | 66.6667 | 50.0000 | 100.0000 | 98.9848 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.6102 | 2 | 3 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.1831 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.3333 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.4359 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | * | 57.1429 | 50.0000 | 66.6667 | 97.2477 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.0526 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.2500 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 66.6667 | 66.6667 | 96.3415 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9735 | 2 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | decoy | homalt | 80.0000 | 100.0000 | 66.6667 | 99.8399 | 1 | 0 | 2 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1649 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1416 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |