PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 714 715 716 717 718 719 720 721 722 ... 1720 1721 » 35851-35900 / 86044 show all
gduggal-bwaplat	INDEL	D16_PLUS	map_l125_m2_e1	hetalt	66.6667	50.0000	100.0000	95.2381	2	2	2	0	0
gduggal-bwaplat	INDEL	D16_PLUS	map_l125_m2_e1	homalt	66.6667	50.0000	100.0000	96.9697	2	2	2	0	0
gduggal-bwaplat	INDEL	D16_PLUS	map_l250_m1_e0	*	66.6667	50.0000	100.0000	99.1632	2	2	2	0	0
gduggal-bwaplat	INDEL	D16_PLUS	tech_badpromoters	*	66.6667	50.0000	100.0000	50.0000	2	2	2	0	0
gduggal-bwaplat	INDEL	D16_PLUS	tech_badpromoters	het	66.6667	50.0000	100.0000	0.0000	2	2	2	0	0
gduggal-bwaplat	INDEL	D1_5	decoy	het	100.0000	100.0000	100.0000	99.9868	2	0	2	0	0
gduggal-bwaplat	INDEL	D1_5	map_l125_m0_e0	hetalt	80.0000	66.6667	100.0000	99.2701	2	1	2	0	0
gduggal-bwaplat	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
eyeh-varpipe	INDEL	I6_15	map_l250_m0_e0	het	0.0000	0.0000	100.0000	96.4912	0	0	2	0	0
eyeh-varpipe	INDEL	I6_15	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	95.8333	1	0	2	0	0
eyeh-varpipe	INDEL	I6_15	map_l250_m2_e0	hetalt	0.0000	0.0000	100.0000	88.8889	0	0	2	0	0
eyeh-varpipe	INDEL	I6_15	map_l250_m2_e1	hetalt	0.0000	0.0000	100.0000	88.8889	0	0	2	0	0
eyeh-varpipe	INDEL	I6_15	tech_badpromoters	hetalt	80.0000	66.6667	100.0000	33.3333	2	1	2	0	0
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	0.0000	0.0000	40.0000	95.5357	0	0	2	3	2	66.6667
eyeh-varpipe	SNP	ti	decoy	het	0.0000	0.0000	100.0000	99.9962	0	0	2	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	0.0000	0.0000	40.0000	95.0495	0	0	2	3	2	66.6667
eyeh-varpipe	SNP	tv	decoy	het	0.0000	0.0000	100.0000	99.9939	0	0	2	0	0
eyeh-varpipe	SNP	tv	decoy	homalt	0.0000	0.0000	100.0000	99.9851	0	0	2	0	0
eyeh-varpipe	SNP	tv	map_l250_m0_e0	hetalt	0.0000	0.0000	66.6667	95.7746	0	0	2	1	0	0.0000
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	40.0000	40.0000	40.0000	99.5802	2	3	2	3	2	66.6667
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	44.4444	50.0000	40.0000	99.5759	2	2	2	3	2	66.6667
gduggal-bwafb	INDEL	*	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	66.6667	4	0	2	0	0
gduggal-bwafb	INDEL	D16_PLUS	decoy	homalt	100.0000	100.0000	100.0000	97.0149	2	0	2	0	0
gduggal-bwafb	INDEL	D16_PLUS	func_cds	homalt	66.6667	50.0000	100.0000	50.0000	2	2	2	0	0
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	56.0000	63.6364	50.0000	66.6667	7	4	2	2	2	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	decoy	homalt	100.0000	100.0000	100.0000	98.6486	2	0	2	0	0
raldana-dualsentieon	INDEL	D16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	97.0588	2	0	2	0	0
raldana-dualsentieon	INDEL	D1_5	decoy	het	100.0000	100.0000	100.0000	99.9456	2	0	2	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	99.2674	2	0	2	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	99.2481	2	0	2	0	0
raldana-dualsentieon	INDEL	D1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	97.4359	2	0	2	0	0
raldana-dualsentieon	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.4684	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	84.6154	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	91.6667	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	96.4286	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	93.5484	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	94.5946	2	0	2	0	0
raldana-dualsentieon	INDEL	D6_15	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	94.7368	2	0	2	0	0
raldana-dualsentieon	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	86.6667	2	0	2	0	0
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	50.0000	50.0000	50.0000	83.3333	2	2	2	2	0	0.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	66.6667	50.0000	100.0000	66.6667	1	1	2	0	0
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	66.6667	50.0000	100.0000	81.8182	2	2	2	0	0
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	50.0000	2	0	2	0	0
raldana-dualsentieon	INDEL	I16_PLUS	map_l100_m0_e0	homalt	100.0000	100.0000	100.0000	97.4026	2	0	2	0	0
raldana-dualsentieon	INDEL	I16_PLUS	map_l100_m1_e0	hetalt	80.0000	66.6667	100.0000	88.2353	2	1	2	0	0
raldana-dualsentieon	INDEL	I16_PLUS	map_l100_m2_e0	hetalt	80.0000	66.6667	100.0000	90.9091	2	1	2	0	0
raldana-dualsentieon	INDEL	I16_PLUS	map_l100_m2_e1	hetalt	80.0000	66.6667	100.0000	91.3043	2	1	2	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge