PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
35701-35750 / 86044 show all
gduggal-snapfbINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
57.1429
40.0000
100.0000
99.8589
23200
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.8539
22200
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
31.5789
18.7500
100.0000
99.9839
313200
gduggal-snapfbINDEL*tech_badpromotershetalt
85.7143
75.0000
100.0000
66.6667
31200
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
80.0000
100.0000
66.6667
98.8806
20210
0.0000
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
94.4444
20200
gduggal-bwaplatINDELD6_15map_l150_m0_e0hetalt
57.1429
40.0000
100.0000
97.5309
23200
gduggal-bwaplatINDELD6_15map_l150_m0_e0homalt
44.4444
28.5714
100.0000
98.0198
25200
gduggal-bwaplatINDELD6_15map_l250_m1_e0homalt
57.1429
40.0000
100.0000
97.9381
23200
gduggal-bwaplatINDELD6_15map_l250_m2_e0homalt
50.0000
33.3333
100.0000
98.1481
24200
gduggal-bwaplatINDELD6_15map_l250_m2_e1homalt
50.0000
33.3333
100.0000
98.1818
24200
gduggal-bwaplatINDELD6_15tech_badpromotershomalt
50.0000
33.3333
100.0000
80.0000
24200
gduggal-bwaplatINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
75.0000
20200
gduggal-bwaplatINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
57.1429
50.0000
66.6667
90.3226
22211
100.0000
gduggal-bwaplatINDELI16_PLUSmap_l150_m1_e0*
30.7692
18.1818
100.0000
97.8947
29200
gduggal-bwaplatINDELI16_PLUSmap_l150_m2_e0*
30.7692
18.1818
100.0000
98.0198
29200
gduggal-bwaplatINDELI16_PLUSmap_l150_m2_e1*
30.7692
18.1818
100.0000
98.0198
29200
gduggal-bwaplatINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
66.6667
20200
gduggal-bwaplatINDELI6_15map_l150_m0_e0*
40.0000
25.0000
100.0000
99.2754
26200
gduggal-bwaplatINDELI6_15map_l250_m1_e0*
44.4444
28.5714
100.0000
99.3750
25200
gduggal-bwaplatINDELI6_15map_l250_m2_e0het
57.1429
40.0000
100.0000
99.2701
23200
gduggal-bwaplatINDELI6_15map_l250_m2_e1het
57.1429
40.0000
100.0000
99.3007
23200
gduggal-bwaplatINDELI6_15tech_badpromotershetalt
80.0000
66.6667
100.0000
50.0000
21200
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
83.3333
20200
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_triTR_51to200het
50.0000
33.3333
100.0000
99.3939
24200
gduggal-bwaplatSNPtisegduphetalt
100.0000
100.0000
100.0000
99.1667
20200
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
50.0000
33.3333
100.0000
97.9167
24200
gduggal-bwavardINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9255
30200
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
98.3871
21211
100.0000
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
80.0000
100.0000
66.6667
98.2558
20211
100.0000
eyeh-varpipeINDELC1_5lowcmp_SimpleRepeat_quadTR_51to200het
0.0000
0.0000
50.0000
94.5946
00220
0.0000
eyeh-varpipeINDELC1_5map_l125_m1_e0hetalt
0.0000
0.0000
100.0000
98.6667
00200
eyeh-varpipeINDELC1_5map_l125_m2_e0hetalt
0.0000
0.0000
100.0000
98.8304
00200
eyeh-varpipeINDELC1_5map_l125_m2_e1hetalt
0.0000
0.0000
100.0000
98.8571
00200
eyeh-varpipeINDELC1_5map_l250_m0_e0*
0.0000
0.0000
100.0000
99.2754
00200
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
33.3333
95.3488
00242
50.0000
eyeh-varpipeINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
6.2500
88.7324
0023016
53.3333
eyeh-varpipeINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
96.2264
00200
eyeh-varpipeINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
0.0000
0.0000
50.0000
94.3662
00221
50.0000
eyeh-varpipeINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
8.3333
87.3684
0022212
54.5455
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
12.5000
91.6230
002149
64.2857
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
96.4912
00200
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
50.0000
92.8571
00221
50.0000
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
100.0000
100.0000
100.0000
99.3080
10200
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_triTR_51to200*
0.0000
0.0000
50.0000
78.9474
00221
50.0000
eyeh-varpipeINDELC6_15map_l100_m0_e0*
0.0000
0.0000
100.0000
98.1308
00200
eyeh-varpipeINDELC6_15map_l125_m1_e0*
0.0000
0.0000
100.0000
98.4615
00200
eyeh-varpipeINDELC6_15map_l125_m2_e0*
0.0000
0.0000
100.0000
98.6395
00200
eyeh-varpipeINDELC6_15map_l125_m2_e1*
0.0000
0.0000
100.0000
98.6755
00200
eyeh-varpipeINDELC6_15segduphomalt
0.0000
0.0000
66.6667
97.3684
00210
0.0000