PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
35201-35250 / 86044 show all
ltrigg-rtg2INDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
50.0000
20200
ltrigg-rtg2INDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
75.0000
20200
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
96.0000
10200
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
80.0000
100.0000
66.6667
85.0000
20210
0.0000
ltrigg-rtg2INDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.9011
20200
ltrigg-rtg2INDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
99.0868
20200
ltrigg-rtg2INDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
99.0991
20200
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8529
20200
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.6721
20200
ltrigg-rtg2INDELI6_15map_l150_m0_e0het
66.6667
50.0000
100.0000
95.7447
22200
ltrigg-rtg2INDELI6_15map_l250_m1_e0het
66.6667
50.0000
100.0000
96.5517
22200
ltrigg-rtg2SNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.8889
22200
mlin-fermikitINDELD1_5map_l250_m1_e0hetalt
80.0000
66.6667
100.0000
92.8571
21200
mlin-fermikitINDELD1_5map_l250_m2_e0hetalt
80.0000
66.6667
100.0000
95.0000
21200
mlin-fermikitINDELD1_5map_l250_m2_e1hetalt
80.0000
66.6667
100.0000
95.3488
21200
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
50.0000
50.0000
50.0000
98.0100
22222
100.0000
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
96.6667
20222
100.0000
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
91.6667
20200
mlin-fermikitINDELD6_15map_l125_m0_e0hetalt
44.4444
33.3333
66.6667
80.0000
24210
0.0000
mlin-fermikitINDELD6_15map_l250_m1_e0homalt
50.0000
40.0000
66.6667
96.1538
23211
100.0000
mlin-fermikitINDELD6_15map_l250_m2_e0homalt
40.0000
33.3333
50.0000
95.7447
24222
100.0000
mlin-fermikitINDELD6_15map_l250_m2_e1homalt
40.0000
33.3333
50.0000
95.8333
24222
100.0000
mlin-fermikitINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
88.8889
20200
mlin-fermikitINDELI16_PLUSmap_l125_m0_e0*
40.0000
33.3333
50.0000
89.7436
24221
50.0000
mlin-fermikitINDELI16_PLUSmap_l125_m1_e0homalt
57.1429
66.6667
50.0000
89.1892
21221
50.0000
mlin-fermikitINDELI16_PLUSmap_l125_m2_e0homalt
57.1429
66.6667
50.0000
92.5926
21221
50.0000
mlin-fermikitINDELI16_PLUSmap_l125_m2_e1homalt
57.1429
66.6667
50.0000
92.7273
21221
50.0000
mlin-fermikitINDELI16_PLUSmap_l150_m0_e0*
50.0000
50.0000
50.0000
84.0000
22221
50.0000
mlin-fermikitINDELI16_PLUSmap_l150_m1_e0homalt
66.6667
66.6667
66.6667
88.4615
21210
0.0000
mlin-fermikitINDELI16_PLUSmap_l150_m2_e0homalt
66.6667
66.6667
66.6667
92.3077
21210
0.0000
mlin-fermikitINDELI16_PLUSmap_l150_m2_e1homalt
66.6667
66.6667
66.6667
92.5000
21210
0.0000
mlin-fermikitINDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
60.0000
20200
mlin-fermikitINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
20200
mlin-fermikitINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
32.8502
62.9630
22.2222
78.5714
1710277
100.0000
mlin-fermikitINDELI6_15func_cdshetalt
66.6667
50.0000
100.0000
0.0000
22200
mlin-fermikitINDELI6_15map_l100_m0_e0hetalt
66.6667
50.0000
100.0000
80.0000
22200
mlin-fermikitINDELI6_15map_l125_m0_e0homalt
36.3636
33.3333
40.0000
87.1795
24233
100.0000
mlin-fermikitINDELI6_15map_l150_m0_e0*
33.3333
25.0000
50.0000
93.6508
26221
50.0000
mlin-fermikitINDELI6_15map_l150_m1_e0hetalt
80.0000
66.6667
100.0000
84.6154
21200
mlin-fermikitINDELI6_15map_l150_m2_e0hetalt
80.0000
66.6667
100.0000
88.2353
21200
mlin-fermikitINDELI6_15map_l150_m2_e1hetalt
80.0000
66.6667
100.0000
89.4737
21200
mlin-fermikitINDELI6_15map_l250_m1_e0*
40.0000
28.5714
66.6667
96.1039
25211
100.0000
mlin-fermikitINDELI6_15map_l250_m2_e0het
57.1429
40.0000
100.0000
95.3488
23200
mlin-fermikitINDELI6_15map_l250_m2_e1het
57.1429
40.0000
100.0000
95.4545
23200
mlin-fermikitINDELI6_15tech_badpromotershetalt
80.0000
66.6667
100.0000
60.0000
21200
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
81.8182
20200
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.2353
20200
mlin-fermikitSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200