PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
35151-35200 / 86044 show all
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
13.3333
93.6441
002130
0.0000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
18.1818
92.8571
00290
0.0000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
0.0000
0.0000
10.5263
90.7767
002170
0.0000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
0.0000
25.0000
96.0396
00260
0.0000
qzeng-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
11.7647
95.0292
002150
0.0000
qzeng-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
0.0000
0.0000
15.3846
89.5161
002110
0.0000
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
66.6667
98.0263
00211
100.0000
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.6377
10200
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
100.0000
98.6667
00200
ltrigg-rtg2INDELC6_15segduphetalt
0.0000
0.0000
100.0000
97.4359
00200
ltrigg-rtg2INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
96.9697
20200
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.1014
10200
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.0588
10200
ltrigg-rtg2INDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
91.3043
20200
ltrigg-rtg2INDELD16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
91.3043
21200
ltrigg-rtg2INDELD16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.6667
21200
ltrigg-rtg2INDELD16_PLUSmap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
92.0000
22200
ltrigg-rtg2INDELD16_PLUSmap_l250_m1_e0het
80.0000
66.6667
100.0000
95.5556
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e0het
80.0000
66.6667
100.0000
96.2963
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e1het
80.0000
66.6667
100.0000
96.4286
21200
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2857
20200
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2806
20200
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9981
10200
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9884
10200
ltrigg-rtg2INDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
98.6111
20200
ltrigg-rtg2INDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.8636
30200
ltrigg-rtg2INDELD1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
99.0000
30200
ltrigg-rtg2INDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
99.0244
30200
ltrigg-rtg2INDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
33.3333
20200
ltrigg-rtg2INDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
66.6667
20200
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.8723
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
75.0000
20200
ltrigg-rtg2INDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
94.7368
20200
ltrigg-rtg2INDELD6_15map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
96.5517
20200
ltrigg-rtg2INDELD6_15map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
96.9231
20200
ltrigg-rtg2INDELD6_15map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
96.9697
20200
ltrigg-rtg2INDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
66.6667
20200
ltrigg-rtg2INDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.6667
50.0000
100.0000
90.0000
22200
ltrigg-rtg2INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
80.0000
66.6667
100.0000
95.4545
21200
ltrigg-rtg2INDELI16_PLUSmap_l125_m0_e0het
66.6667
66.6667
66.6667
80.0000
21210
0.0000
ltrigg-rtg2INDELI16_PLUSmap_l125_m1_e0homalt
80.0000
66.6667
100.0000
84.6154
21200
ltrigg-rtg2INDELI16_PLUSmap_l125_m2_e0homalt
80.0000
66.6667
100.0000
88.8889
21200
ltrigg-rtg2INDELI16_PLUSmap_l125_m2_e1homalt
80.0000
66.6667
100.0000
88.8889
21200
ltrigg-rtg2INDELI16_PLUSmap_l150_m0_e0het
80.0000
100.0000
66.6667
75.0000
20210
0.0000
ltrigg-rtg2INDELI16_PLUSmap_l150_m1_e0homalt
80.0000
66.6667
100.0000
84.6154
21200
ltrigg-rtg2INDELI16_PLUSmap_l150_m2_e0homalt
80.0000
66.6667
100.0000
87.5000
21200
ltrigg-rtg2INDELI16_PLUSmap_l150_m2_e1homalt
80.0000
66.6667
100.0000
87.5000
21200
ltrigg-rtg2INDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
50.0000
20200