PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34301-34350 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 99.0291 | 1 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.9431 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 94.8718 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 50.0000 | 95.4545 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 95.3488 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 20.0000 | 89.5833 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 83.3333 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 100.0000 | 98.2456 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 100.0000 | 95.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 100.0000 | 88.8889 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 20.0000 | 95.5357 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8390 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9975 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9961 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8428 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8377 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 97.4576 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 96.7033 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6429 | 1 | 0 | 1 | 0 | 0 | ||