PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
26451-26500 / 86044 show all
cchapple-customSNP*segdupwithalthomalt
0.0000
100.0000
00000
cchapple-customSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPti*hetalt
0.0000
99.4845
0.0000
0.0000
5793000
cchapple-customSNPtiHG002complexvarhetalt
0.0000
98.5507
0.0000
0.0000
2043000
cchapple-customSNPtiHG002compoundhethetalt
0.0000
99.4819
0.0000
0.0000
5763000
cchapple-customSNPtidecoy*
0.0000
100.0000
00000
cchapple-customSNPtidecoyhet
0.0000
100.0000
00000
cchapple-customSNPtidecoyhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtidecoyhomalt
0.0000
100.0000
00000
cchapple-customSNPtifunc_cdshetalt
0.0000
100.0000
0.0000
0.0000
80000
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
83.3333
0.0000
0.0000
51000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
100.0000
0.0000
0.0000
120000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
100.0000
0.0000
0.0000
120000
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000