PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
85751-85800 / 86044 show all
qzeng-customSNPtv*het
99.3391
99.1721
99.5067
29.7409
58680548995855782903302
10.4030
jpowers-varprowlSNPtv*het
99.1037
99.3176
98.8908
29.6901
58765740385878246593166
2.5178
jmaeng-gatkSNPtv*het
99.5410
99.5807
99.5013
31.3482
5892152481589142295352
1.7609
ckim-gatkSNPtv*het
99.5973
99.6088
99.5858
30.9441
5893812315589308245161
2.4888
ndellapenna-hhgaSNPtv*het
99.8309
99.7335
99.9285
20.7977
590119157759013842245
10.6635
egarrison-hhgaSNPtv*het
99.8548
99.7659
99.9438
20.8578
590311138559033233244
13.2530
raldana-dualsentieonSNPtv*het
99.8532
99.8447
99.8617
22.1748
59077791959070381822
2.6895
hfeng-pmm1SNPtv*het
99.9077
99.8553
99.9601
20.8554
59084085659076623619
8.0509
hfeng-pmm2SNPtv*het
99.8886
99.8560
99.9212
22.0414
59084485259077046618
3.8627
gduggal-snapfbSNPtv*het
98.4503
99.7960
97.1404
29.1063
590497120759083917393571
3.2829
hfeng-pmm3SNPtv*het
99.9161
99.8738
99.9586
21.3235
59094974759087524512
4.8980
ghariani-varprowlSNPtv*het
98.5275
99.8276
97.2608
33.9264
590670102059087716641154
0.9254
gduggal-bwafbSNPtv*het
99.6077
99.8543
99.3624
27.5297
5908428625909313792213
5.6171
ltrigg-rtg2SNPtv*het
99.7405
99.8410
99.6402
19.4900
590763941590991213460
2.8116
ltrigg-rtg1SNPtv*het
99.7418
99.8465
99.6372
20.0234
590796908591027215250
2.3234
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
jlack-gatkSNPtv*het
99.3606
99.9332
98.7945
31.3268
5913013955912307214153
2.1209
jli-customSNPtv*het
99.8561
99.9410
99.7714
21.8920
591347349591292135558
4.2804
dgrover-gatkSNPtv*het
99.8830
99.9556
99.8105
23.6829
591433263591362112357
5.0757
bgallagher-sentieonSNPtv*het
99.8318
99.9594
99.7045
23.0898
591456240591385175353
3.0234
ckim-dragenSNPtv*het
99.7113
99.9417
99.4820
27.9772
5913513455915443080126
4.0909
cchapple-customSNPtv*het
99.6701
99.8702
99.4708
26.9512
5909287685915533147233
7.4039
ckim-isaacSNP*HG002complexvar*
95.9550
92.3552
99.8467
16.9098
696714576716970671070847
79.1589
eyeh-varpipeSNP*HG002complexvar*
99.8557
99.8989
99.8126
18.3366
7536227636998061314293
22.2983
gduggal-snapvardSNP*HG002complexvar*
97.8941
96.7741
99.0404
21.0357
7300482433670836268632537
36.9663
gduggal-bwavardSNP*HG002complexvar*
98.3118
97.1354
99.5171
19.6107
7327752161071218234562272
65.7407
anovak-vgSNP*HG002complexvar*
97.6964
96.9184
98.4870
19.4533
73113823247712315109438438
77.1087
ciseli-customSNP*HG002complexvar*
95.9712
96.9985
94.9655
20.7202
73174222643718679381008358
21.9370
qzeng-customSNP*HG002complexvar*
99.1204
98.4430
99.8072
19.9398
742639117467238431398631
45.1359
asubramanian-gatkSNP*HG002complexvar*
98.2310
96.5837
99.9354
19.5730
7286092577272846647154
11.4650
gduggal-bwaplatSNP*HG002complexvar*
97.7797
96.6309
98.9561
21.4247
7289652541672951676961060
13.7734
mlin-fermikitSNP*HG002complexvar*
98.2239
97.1863
99.2840
18.6883
7331592122673307452875014
94.8364
gduggal-snapplatSNP*HG002complexvar*
97.9967
97.4708
98.5284
22.9400
73530519080736073109941866
16.9729
ckim-vqsrSNP*HG002complexvar*
98.7826
97.6098
99.9840
19.7255
7363501803173620111858
49.1525
astatham-gatkSNP*HG002complexvar*
99.1835
98.3938
99.9860
19.2643
7422641211774211210462
59.6154
jmaeng-gatkSNP*HG002complexvar*
99.5566
99.1508
99.9656
19.5091
7479756406747823257106
41.2451
ckim-gatkSNP*HG002complexvar*
99.5695
99.1746
99.9675
19.4723
7481546227748002243101
41.5638
jpowers-varprowlSNP*HG002complexvar*
99.4683
99.2937
99.6435
20.7160
749051532874940426811602
59.7538
cchapple-customSNP*HG002complexvar*
99.8003
99.6796
99.9214
18.6735
7519642417749599590426
72.2034
ndellapenna-hhgaSNP*HG002complexvar*
99.7910
99.6474
99.9350
18.9550
7517212660751769489351
71.7791
egarrison-hhgaSNP*HG002complexvar*
99.8252
99.7002
99.9506
18.9844
7521192262752170372223
59.9462
gduggal-snapfbSNP*HG002complexvar*
99.1200
99.6105
98.6343
21.7486
7514472938752277104161326
12.7304
hfeng-pmm2SNP*HG002complexvar*
99.8743
99.7689
99.9799
18.8346
752638174375249515159
39.0728
hfeng-pmm1SNP*HG002complexvar*
99.8780
99.7704
99.9859
18.8078
752649173275250410651
48.1132
raldana-dualsentieonSNP*HG002complexvar*
99.8769
99.7713
99.9826
18.8281
752656172575251113147
35.8779
ghariani-varprowlSNP*HG002complexvar*
99.3539
99.7064
99.0038
22.0629
752159221575254975721579
20.8531
ltrigg-rtg1SNP*HG002complexvar*
99.8490
99.7395
99.9587
18.9301
7524191965752595311136
43.7299
hfeng-pmm3SNP*HG002complexvar*
99.8875
99.7894
99.9859
18.8968
752792158975264510640
37.7358
gduggal-bwafbSNP*HG002complexvar*
99.8109
99.7664
99.8554
20.0831
75262317627527831090464
42.5688
ltrigg-rtg2SNP*HG002complexvar*
99.8684
99.7896
99.9473
18.8678
7527971587752943397167
42.0655