PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
85601-85650 / 86044 show all
gduggal-snapfbSNPtiHG002complexvarhet
99.0494
99.5771
98.5273
20.1517
31343513313138974692557
11.8713
ltrigg-rtg2SNPtiHG002complexvarhet
99.8501
99.7528
99.9475
16.9710
31398877831399216546
27.8788
gduggal-bwafbSNPtiHG002complexvarhet
99.7807
99.7408
99.8207
18.4948
313950816314019564202
35.8156
rpoplin-dv42SNPtiHG002complexvarhet
99.9002
99.8243
99.9761
16.8206
3142135533141527555
73.3333
jlack-gatkSNPtiHG002complexvarhet
99.8980
99.8818
99.9142
17.5660
31439437231434027088
32.5926
jli-customSNPtiHG002complexvarhet
99.9353
99.9002
99.9704
16.9557
3144523143144189332
34.4086
dgrover-gatkSNPtiHG002complexvarhet
99.9452
99.9164
99.9739
17.0118
3145032633144498232
39.0244
bgallagher-sentieonSNPtiHG002complexvarhet
99.9477
99.9234
99.9720
16.9632
3145252413144718829
32.9545
ckim-dragenSNPtiHG002complexvarhet
99.9189
99.9266
99.9111
17.5776
314535231314661280125
44.6429
eyeh-varpipeINDEL***
92.5779
91.3854
93.8021
63.3717
314861296813171112095320114
95.9958
ckim-isaacINDEL***
95.8099
93.7006
98.0163
48.2658
3228382170432185765144603
70.6632
gduggal-snapfbINDEL***
92.2602
90.5733
94.0112
57.2799
31206332479322983205759778
47.5237
mlin-fermikitINDEL***
95.5997
94.8918
96.3183
54.9677
326942176003265721248312097
96.9078
gduggal-snapvardINDEL***
83.0264
83.4429
82.6139
57.1178
287491570453277556897651941
75.3030
ndellapenna-hhgaINDEL***
97.3838
97.0938
97.6756
75.8762
3345291001333524979786638
83.2038
egarrison-hhgaINDEL***
97.4253
97.1646
97.6874
75.7607
334773976933527679376682
84.1880
ltrigg-rtg1INDEL***
99.0160
98.3355
99.7061
56.0561
3388065735338554998454
45.4910
asubramanian-gatkINDEL***
98.8418
98.5404
99.1451
71.3671
339513502933944229271779
60.7790
raldana-dualsentieonINDEL***
99.1095
98.7566
99.4648
57.7282
340258428434012018301626
88.8525
jlack-gatkINDEL***
98.6899
98.8138
98.5664
60.1151
340455408734033249502708
54.7071
rpoplin-dv42INDEL***
98.9802
98.7882
99.1728
78.6199
340367417534037028392640
92.9905
ltrigg-rtg2INDEL***
99.2539
98.8759
99.6347
56.1284
34066838733404111248516
41.3462
hfeng-pmm3INDEL***
99.3628
99.0161
99.7120
56.9384
3411523390341013985798
81.0152
hfeng-pmm2INDEL***
99.3119
99.0152
99.6103
57.8578
341149339334101513341012
75.8621
jmaeng-gatkINDEL***
99.1098
99.0216
99.1981
60.9184
341171337134103827571621
58.7958
hfeng-pmm1INDEL***
99.3397
99.0289
99.6526
57.3618
34119633463410571189887
74.6005
ckim-vqsrINDEL***
99.2541
99.0614
99.4476
60.7768
341308323434116718951532
80.8443
jli-customINDEL***
99.3675
99.0788
99.6580
57.6935
34136831743412131171951
81.2126
ckim-dragenINDEL***
99.1359
99.1574
99.1143
60.3466
341639290334130330502010
65.9016
ckim-gatkINDEL***
99.2271
99.1551
99.2992
60.7185
341631291134149224101553
64.4398
bgallagher-sentieonINDEL***
99.2678
99.2143
99.3213
59.6036
341835270734170323351924
82.3983
astatham-gatkINDEL***
99.3424
99.2404
99.4446
59.9126
341925261734178819091550
81.1943
dgrover-gatkINDEL***
99.4009
99.3458
99.4561
60.2776
342288225434215418711513
80.8658
gduggal-bwafbINDEL***
96.9474
95.5004
98.4390
56.3888
3290391550334249254314691
86.3745
qzeng-customINDEL***
96.8316
96.8703
96.7929
56.5999
33375910783347076115005547
48.2348
ckim-isaacSNPtv*homalt
98.1562
96.3855
99.9931
16.5795
363492136313635152518
72.0000
cchapple-customINDEL***
99.1388
98.8448
99.4346
57.2260
340562398036352020671592
77.0198
gduggal-bwaplatSNPtv*homalt
98.6202
97.3009
99.9757
22.0523
366944101793668718982
92.1348
asubramanian-gatkSNPtv*homalt
98.7491
97.5342
99.9946
20.2324
36782492993678102017
85.0000
ckim-vqsrSNPtv*homalt
98.8369
97.7055
99.9948
20.5893
36847086533684561916
84.2105
gduggal-snapvardSNPtv*homalt
99.4119
98.9054
99.9237
19.2463
3729954128370593283154
54.4170
gduggal-snapplatSNPtv*homalt
99.0993
98.3541
99.8560
22.6563
3709166207370887535142
26.5421
eyeh-varpipeSNPtv*homalt
99.9630
99.9676
99.9583
19.9401
37700112237116515557
36.7742
gduggal-bwavardSNPtv*homalt
99.4965
99.0327
99.9647
19.0358
373475364837122013186
65.6489
anovak-vgSNPtv*homalt
99.0679
98.8237
99.3132
19.4559
372687443637134125681960
76.3240
qzeng-customSNPtv*homalt
99.5964
99.2947
99.8999
20.4155
3744632660372209373242
64.8794
mlin-fermikitSNPtv*homalt
98.8702
98.8876
98.8528
20.1908
372928419537292343284101
94.7551
ciseli-customSNPtv*homalt
98.4608
99.4400
97.5007
22.4395
375011211237361095773591
37.4961
ckim-gatkSNPtv*homalt
99.5305
99.0738
99.9914
20.3623
37363034933736163219
59.3750
jmaeng-gatkSNPtv*homalt
99.5328
99.0793
99.9904
20.3157
37365134723736373623
63.8889