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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
85501-85550 / 86044 show all
gduggal-snapvardSNPtvHG002complexvar*
97.7872
96.7504
98.8464
23.7234
238156799923305727201012
37.2059
gduggal-bwavardSNPtvHG002complexvar*
98.2474
97.1213
99.3998
22.3354
23906970862343431415923
65.2297
eyeh-varpipeSNPtvHG002complexvar*
99.7847
99.8883
99.6813
20.5762
245880275235205752120
15.9574
anovak-vgSNPtvHG002complexvar*
97.7258
97.1262
98.3329
22.6263
239081707423558939942964
74.2113
gduggal-bwaplatSNPtvHG002complexvar*
97.3488
95.7603
98.9909
25.1801
235716104362359302405362
15.0520
ciseli-customSNPtvHG002complexvar*
94.9824
96.7736
93.2564
24.4003
2382137942236085170722875
16.8404
asubramanian-gatkSNPtvHG002complexvar*
98.0754
96.2442
99.9776
22.6117
23690792452368245318
33.9623
gduggal-snapplatSNPtvHG002complexvar*
97.5342
96.7281
98.3538
26.8142
23810180542384503991673
16.8629
qzeng-customSNPtvHG002complexvar*
99.0948
98.4189
99.7800
23.2771
2422633892238613526243
46.1977
cchapple-customINDEL**het
99.2026
98.9188
99.4881
58.0034
19203420992388471229782
63.6290
mlin-fermikitSNPtvHG002complexvar*
98.1368
97.0653
99.2323
22.0366
238931722423886118481739
94.1017
ckim-vqsrSNPtvHG002complexvar*
98.6339
97.3216
99.9820
22.8566
23955965932394684320
46.5116
astatham-gatkSNPtvHG002complexvar*
99.1122
98.2547
99.9847
22.3181
24185642962417693721
56.7568
jmaeng-gatkSNPtvHG002complexvar*
99.5035
99.0473
99.9639
22.5835
24380723452437158831
35.2273
ckim-gatkSNPtvHG002complexvar*
99.5164
99.0689
99.9680
22.5419
24386022922437687828
35.8974
cchapple-customSNPtvHG002complexvar*
99.7805
99.6506
99.9108
21.2813
245292860244113218153
70.1835
jpowers-varprowlSNPtvHG002complexvar*
99.3235
99.1623
99.4852
24.4097
24409020622442851264803
63.5285
ndellapenna-hhgaSNPtvHG002complexvar*
99.7569
99.5881
99.9262
21.8704
2451381014245164181131
72.3757
ghariani-varprowlSNPtvHG002complexvar*
98.9457
99.5507
98.3479
26.3760
24504611062452664120790
19.1748
egarrison-hhgaSNPtvHG002complexvar*
99.7884
99.6287
99.9487
21.8626
24523891424526712678
61.9048
hfeng-pmm2SNPtvHG002complexvar*
99.8387
99.7038
99.9739
21.6976
2454237292453396421
32.8125
hfeng-pmm1SNPtvHG002complexvar*
99.8458
99.7087
99.9833
21.6860
2454357172453494120
48.7805
raldana-dualsentieonSNPtvHG002complexvar*
99.8458
99.7136
99.9784
21.7224
2454477052453625318
33.9623
hfeng-pmm3SNPtvHG002complexvar*
99.8576
99.7315
99.9841
21.7544
2454916612454043915
38.4615
gduggal-snapfbSNPtvHG002complexvar*
98.7938
99.5787
98.0211
25.3464
24511810372454404955529
10.6761
gduggal-bwafbSNPtvHG002complexvar*
99.7871
99.7453
99.8289
23.3366
245528627245605421174
41.3302
rpoplin-dv42SNPtvHG002complexvar*
99.9096
99.8615
99.9577
21.9240
24581134124570210487
83.6538
ltrigg-rtg1SNPtvHG002complexvar*
99.8396
99.7384
99.9410
21.7226
24551164424576814559
40.6897
jli-customSNPtvHG002complexvar*
99.9252
99.8822
99.9683
21.9781
2458622902457917833
42.3077
jlack-gatkSNPtvHG002complexvar*
99.9000
99.8932
99.9069
22.4572
24588926324579522981
35.3712
ltrigg-rtg2SNPtvHG002complexvar*
99.8482
99.7705
99.9260
21.7021
24559056524583418272
39.5604
dgrover-gatkSNPtvHG002complexvar*
99.9486
99.9236
99.9736
22.0729
2459641882458736532
49.2308
bgallagher-sentieonSNPtvHG002complexvar*
99.9492
99.9313
99.9671
22.0213
2459831692458928131
38.2716
ckim-dragenSNPtvHG002complexvar*
99.9267
99.9175
99.9359
22.5633
24594920324620015880
50.6329
anovak-vgINDEL***
70.4960
69.7491
71.2591
54.1876
24031510422724860610027081436
81.2167
gduggal-snapplatINDEL***
76.4210
69.0418
85.5664
67.7420
237878106664258555436146600
15.1328
eyeh-varpipeSNP*HG002complexvarhomalt
99.9303
99.9127
99.9480
18.2871
288323252263218137103
75.1825
ckim-isaacSNP*HG002complexvarhomalt
95.6391
91.6604
99.9788
17.3239
264509240662645635645
80.3571
gduggal-snapvardSNP*HG002complexvarhomalt
98.1658
96.5628
99.8230
18.7873
2786569919269038477269
56.3941
gduggal-bwavardSNP*HG002complexvarhomalt
98.4291
96.9651
99.9379
18.6318
2798178758270523168110
65.4762
anovak-vgSNP*HG002complexvarhomalt
98.2895
97.5091
99.0824
19.5966
281387718827329325312130
84.1565
qzeng-customSNP*HG002complexvarhomalt
99.2256
98.6350
99.8233
20.2251
2846363939274538486380
78.1893
asubramanian-gatkSNP*HG002complexvarhomalt
98.0724
96.2540
99.9608
20.3588
2777641081027774010923
21.1009
gduggal-bwaplatSNP*HG002complexvarhomalt
98.2316
96.5943
99.9253
21.0137
2787469828278424208186
89.4231
ckim-vqsrSNP*HG002complexvarhomalt
98.2744
96.6168
99.9900
20.3688
27881197632787872826
92.8571
ciseli-customSNP*HG002complexvarhomalt
96.2605
98.9760
93.6900
21.2638
2856202955278961187887728
41.1326
gduggal-snapplatSNP*HG002complexvarhomalt
98.9173
98.0729
99.7763
21.2516
2830145561282787634338
53.3123
mlin-fermikitSNP*HG002complexvarhomalt
98.3225
98.4247
98.2205
20.7847
284029454628404351464990
96.9685
ckim-gatkSNP*HG002complexvarhomalt
99.2945
98.6114
99.9870
20.0389
28456740072845433731
83.7838
jmaeng-gatkSNP*HG002complexvarhomalt
99.3008
98.6263
99.9845
20.0307
28461039642845864439
88.6364