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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
85401-85450 / 86044 show all
jmaeng-gatkINDELI1_5**
99.2409
99.0383
99.4444
59.6817
1492151449149263834391
46.8825
ckim-vqsrINDELI1_5**
99.3579
99.0515
99.6662
59.3791
1492351429149282500397
79.4000
ckim-dragenINDELI1_5**
99.2774
99.1830
99.3720
58.7161
1494331231149372944540
57.2034
ckim-gatkINDELI1_5**
99.3427
99.1491
99.5371
59.3239
1493821282149430695401
57.6978
cchapple-customINDELI1_5**
99.2924
98.8889
99.6992
56.2734
1489901674149480451355
78.7140
jli-customINDELI1_5**
99.4941
99.2055
99.7844
57.0293
1494671197149502323257
79.5666
astatham-gatkINDELI1_5**
99.4616
99.2520
99.6722
58.6147
1495371127149586492402
81.7073
bgallagher-sentieonINDELI1_5**
99.4227
99.2586
99.5873
58.2134
1495471117149597620500
80.6452
hfeng-pmm3INDELI1_5**
99.5494
99.2672
99.8332
56.8186
1495601104149606250187
74.8000
hfeng-pmm1INDELI1_5**
99.5147
99.2699
99.7606
57.3300
1495641100149609359252
70.1950
hfeng-pmm2INDELI1_5**
99.4998
99.2726
99.7280
57.5644
1495681096149613408306
75.0000
jmaeng-gatkSNPtvHG002complexvarhet
99.6867
99.4221
99.9526
22.2557
1498608711497827116
22.5352
dgrover-gatkINDELI1_5**
99.5294
99.3841
99.6753
59.0782
149736928149786488385
78.8934
ckim-gatkSNPtvHG002complexvarhet
99.7094
99.4639
99.9560
22.1876
1499238081498456619
28.7879
ndellapenna-hhgaSNPtvHG002complexvarhet
99.7024
99.4520
99.9540
21.1664
1499058261499236930
43.4783
cchapple-customSNPtvHG002complexvarhet
99.7615
99.6630
99.8602
21.5432
150223508149954210146
69.5238
hfeng-pmm2SNPtvHG002complexvarhet
99.7540
99.5389
99.9700
20.7785
150036695149957458
17.7778
hfeng-pmm1SNPtvHG002complexvarhet
99.7636
99.5469
99.9813
20.8221
150048683149969289
32.1429
raldana-dualsentieonSNPtvHG002complexvarhet
99.7643
99.5575
99.9720
20.9789
150064667149985429
21.4286
gduggal-snapplatINDEL**het
75.6756
70.3729
81.8427
68.5533
13661757516150007332802606
7.8305
egarrison-hhgaSNPtvHG002complexvarhet
99.7360
99.5170
99.9560
21.2359
1500037281500236628
42.4242
hfeng-pmm3SNPtvHG002complexvarhet
99.7826
99.5854
99.9807
20.9857
150106625150027296
20.6897
ghariani-varprowlSNPtvHG002complexvarhet
98.7696
99.5137
98.0366
26.9661
149998733150145300754
1.7958
gduggal-snapfbSNPtvHG002complexvarhet
98.4837
99.5363
97.4531
25.4817
1500356991503383929342
8.7045
gduggal-bwafbSNPtvHG002complexvarhet
99.7366
99.7134
99.7598
23.4830
150302432150365362122
33.7017
rpoplin-dv42SNPtvHG002complexvarhet
99.8928
99.8249
99.9608
21.2882
1504672641503825946
77.9661
jli-customSNPtvHG002complexvarhet
99.9074
99.8560
99.9588
21.3761
1505142171504546222
35.4839
ltrigg-rtg1SNPtvHG002complexvarhet
99.7971
99.6716
99.9230
21.1569
15023949515045711636
31.0345
jlack-gatkSNPtvHG002complexvarhet
99.8776
99.8932
99.8620
22.3009
15057016115049420864
30.7692
ltrigg-rtg2SNPtvHG002complexvarhet
99.8062
99.7174
99.8951
21.1944
15030842615052315848
30.3797
dgrover-gatkSNPtvHG002complexvarhet
99.9396
99.9138
99.9655
21.5720
1506011301505255221
40.3846
bgallagher-sentieonSNPtvHG002complexvarhet
99.9389
99.9237
99.9542
21.4883
1506161151505406921
30.4348
ckim-dragenSNPtvHG002complexvarhet
99.9058
99.9098
99.9019
22.2740
15059513615074014870
47.2973
gduggal-snapvardINDELD1_5**
87.8248
91.1601
84.7249
55.7284
133771129721600642885822853
79.1912
gduggal-bwaplatINDEL**het
92.4727
86.8430
98.8829
67.5454
168591255421685401904839
44.0651
ciseli-customINDEL**het
87.9280
88.9146
86.9631
62.2120
172609215201740742609613945
53.4373
ckim-isaacSNPtiHG002complexvarhomalt
95.8992
92.1386
99.9798
16.1839
178255152091782863629
80.5556
eyeh-varpipeSNPtiHG002complexvarhomalt
99.9332
99.9188
99.9475
17.3280
1933071571807989569
72.6316
gduggal-snapvardSNPtiHG002complexvarhomalt
98.1979
96.6107
99.8382
17.7966
1869076557182591296181
61.1486
gduggal-bwavardSNPtiHG002complexvarhomalt
98.4467
96.9948
99.9428
17.4866
187650581418352610578
74.2857
jpowers-varprowlINDEL**het
88.4014
94.9432
82.7031
60.8976
18431698171843943856537886
98.2393
eyeh-varpipeINDEL**het
96.2526
95.5711
96.9439
53.1169
185535859818493658305344
91.6638
ckim-isaacINDEL**het
96.5214
95.9358
97.1142
48.5384
186243789018495354963918
71.2882
anovak-vgSNPtiHG002complexvarhomalt
98.2762
97.3918
99.1768
17.9619
188418504618504515361381
89.9089
qzeng-customSNPtiHG002complexvarhomalt
99.2303
98.6432
99.8245
18.6252
1908392625186005327247
75.5352
asubramanian-gatkSNPtiHG002complexvarhomalt
98.1740
96.4210
99.9920
18.6413
18653969241865291515
100.0000
ckim-vqsrSNPtiHG002complexvarhomalt
98.3712
96.8046
99.9893
18.7775
18728161821872712020
100.0000
gduggal-bwaplatSNPtiHG002complexvarhomalt
98.4485
97.0077
99.9328
19.1570
1876745789187425126109
86.5079
mlin-fermikitINDEL**het
96.2161
96.8146
95.6251
53.1659
187949618418751685798282
96.5381
ciseli-customSNPtiHG002complexvarhomalt
96.5088
99.0536
94.0915
19.4065
1916331831189105118755178
43.6042