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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
85051-85100 / 86044 show all
ltrigg-rtg2INDEL*HG002complexvar*
98.9919
98.4780
99.5112
54.8986
75766117175523371227
61.1860
asubramanian-gatkINDEL*HG002complexvar*
98.8559
98.4299
99.2857
62.5855
75730120875611544244
44.8529
hfeng-pmm2INDEL*HG002complexvar*
99.1003
98.4520
99.7572
57.3339
75747119175614184143
77.7174
hfeng-pmm1INDEL*HG002complexvar*
99.1357
98.4949
99.7850
57.1428
75780115875642163121
74.2331
hfeng-pmm3INDEL*HG002complexvar*
99.1462
98.5027
99.7982
57.0316
75786115275648153115
75.1634
jli-customINDEL*HG002complexvar*
99.2454
98.7574
99.7382
56.8994
7598295675827199151
75.8794
rpoplin-dv42INDEL*HG002complexvar*
98.9923
98.6301
99.3571
63.4999
75884105475884491440
89.6130
ckim-vqsrINDEL*HG002complexvar*
99.2578
98.8640
99.6548
58.2159
7606487475924263222
84.4106
jmaeng-gatkINDEL*HG002complexvar*
99.2404
98.8731
99.6104
58.2744
7607186775939297248
83.5017
ckim-isaacSNPtimap_siren*
86.1284
75.6983
99.8922
49.9174
7596724388759758216
19.5122
mlin-fermikitSNPtimap_siren*
84.2869
75.7361
95.0143
45.5372
76005243507600139883501
87.7884
ckim-dragenINDEL*HG002complexvar*
99.3944
99.2565
99.5327
58.0987
7636657276037357301
84.3137
ckim-gatkINDEL*HG002complexvar*
99.3276
99.0226
99.6345
58.1713
7618675276048279226
81.0036
jlack-gatkINDEL*HG002complexvar*
99.2231
99.0863
99.3603
58.0205
7623570376113490357
72.8571
astatham-gatkINDEL*HG002complexvar*
99.4827
99.2916
99.6745
58.3541
7639354576257249212
85.1406
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8427
98.3427
99.3479
69.0114
4747180076325501389
77.6447
bgallagher-sentieonINDEL*HG002complexvar*
99.4954
99.3774
99.6137
58.2041
7645947976328296257
86.8243
dgrover-gatkINDEL*HG002complexvar*
99.5612
99.4476
99.6751
58.4475
7651342576380249210
84.3373
ckim-vqsrSNPtimap_siren*
86.3605
76.1935
99.6585
68.7036
76464238917645126225
9.5420
mlin-fermikitINDELI1_5*het
97.2425
97.2166
97.2684
53.2963
7684122007670121542108
97.8644
ciseli-customSNP*map_sirenhet
87.4519
84.7172
90.3691
62.2108
7708513906768498190211
2.5763
gduggal-bwavardINDELI1_5*het
92.1214
97.7872
87.0762
61.9735
772921749768631140810744
94.1795
eyeh-varpipeINDELI1_5*het
97.6534
97.4342
97.8735
52.4121
7701320287690916711507
90.1855
ckim-isaacINDELI1_5*het
97.5134
97.3900
97.6371
50.7018
7697820637702118641391
74.6245
qzeng-customINDEL*HG002complexvar*
97.6731
97.4200
97.9274
54.9567
749531985772531635731
44.7095
ltrigg-rtg1INDELI1_5*het
99.3128
98.9158
99.7130
54.8506
781848577747122356
25.1121
ltrigg-rtg2INDELI1_5*het
99.5106
99.4497
99.5716
56.0879
786064357786833592
27.4627
qzeng-customSNP*map_sirenhet
92.1648
86.4602
98.6753
68.8551
7867112320779141046710
67.8776
asubramanian-gatkINDELI1_5*het
99.1412
98.6564
99.6308
61.4273
77979106277980289149
51.5571
ghariani-varprowlINDELI1_5*het
92.7410
98.8133
87.3718
65.8570
78102938781201129110122
89.6466
ndellapenna-hhgaINDELI1_5*het
99.3796
99.2245
99.5353
57.8169
7842861378394366178
48.6339
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6609
96.7085
98.6322
60.0245
632002151784541088926
85.1103
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6609
96.7085
98.6322
60.0245
632002151784541088926
85.1103
raldana-dualsentieonINDELI1_5*het
99.5073
99.2827
99.7331
57.9285
7847456778457210142
67.6190
egarrison-hhgaINDELI1_5*het
99.4365
99.3775
99.4956
58.7039
7854949278511398185
46.4824
gduggal-bwaplatINDELD1_5*het
94.1987
89.7070
99.1640
66.4739
78560901478527662219
33.0816
astatham-gatkINDELI1_5*het
99.5857
99.4610
99.7107
60.4880
7861542678596228141
61.8421
jli-customINDELI1_5*het
99.6300
99.4800
99.7804
58.4682
7863041178600173112
64.7399
hfeng-pmm2INDELI1_5*het
99.6023
99.4952
99.7096
59.9116
7864239978624229130
56.7686
jlack-gatkINDELI1_5*het
99.1970
99.4952
98.9006
61.6913
7864239978625874231
26.4302
ckim-vqsrINDELI1_5*het
99.5998
99.5116
99.6881
61.9903
7865538678634246145
58.9431
jmaeng-gatkINDELI1_5*het
99.3909
99.5129
99.2691
62.3588
7865638578640579142
24.5250
ckim-dragenINDELI1_5*het
99.4703
99.6091
99.3319
60.8221
7873230978650529129
24.3856
gduggal-bwaplatSNP*map_sirenhet
92.3406
86.3635
99.2066
74.9301
785831240878653629157
24.9603
hfeng-pmm3INDELI1_5*het
99.7016
99.5433
99.8604
59.2337
786803617866111051
46.3636
hfeng-pmm1INDELI1_5*het
99.6416
99.5559
99.7275
59.6258
7869035178673215113
52.5581
rpoplin-dv42INDELI1_5*het
99.3402
99.5015
99.1794
60.2585
7864739478679651605
92.9339
cchapple-customINDEL*HG002complexvar*
98.8567
98.4455
99.2713
55.5354
75742119678742578462
79.9308
bgallagher-sentieonINDELI1_5*het
99.6628
99.6660
99.6596
60.0640
7877726478760269153
56.8773
ckim-gatkINDELI1_5*het
99.5633
99.6774
99.4495
61.8943
7878625578766436147
33.7156