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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
84901-84950 / 86044 show all
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9085
96.6244
99.2272
64.2470
63145220662918490402
82.0408
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9085
96.6244
99.2272
64.2470
63145220662918490402
82.0408
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8737
96.6718
99.1058
64.7457
63176217562956568465
81.8662
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8737
96.6718
99.1058
64.7457
63176217562956568465
81.8662
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9439
96.7636
99.1534
64.2879
63236211563011538416
77.3234
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9439
96.7636
99.1534
64.2879
63236211563011538416
77.3234
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9182
98.0817
99.7690
70.7759
6319512366306414687
59.5890
astatham-gatkSNP*map_l100_m2_e0*
91.9897
85.2942
99.8259
70.5601
63087108776307611052
47.2727
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.4680
83.0514
78.0406
69.2847
5351010920631201776115073
84.8657
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.7831
96.8990
98.6834
73.3610
62433199863262844717
84.9526
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7771
97.1844
98.3771
67.7791
635111840632861044906
86.7816
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7771
97.1844
98.3771
67.7791
635111840632861044906
86.7816
qzeng-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.1638
96.5250
97.8111
70.9066
6219222396340814191076
75.8280
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0349
98.5054
99.5702
72.8907
6346896363480274249
90.8759
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9428
98.4681
99.4221
74.5651
6344498763485369305
82.6558
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7746
96.6611
98.9141
61.8918
63169218263489697270
38.7374
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7746
96.6611
98.9141
61.8918
63169218263489697270
38.7374
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8272
98.5395
99.1166
73.0877
6349094163503566450
79.5053
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1846
98.5457
99.8318
70.9620
634949376350610786
80.3738
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0302
97.5303
98.5353
67.8515
63737161463506944836
88.5593
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0302
97.5303
98.5353
67.8515
63737161463506944836
88.5593
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2520
97.4920
99.0239
63.2840
63712163963508626529
84.5048
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2520
97.4920
99.0239
63.2840
63712163963508626529
84.5048
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8701
97.6006
98.1411
68.2416
6378315686351312031069
88.8612
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8701
97.6006
98.1411
68.2416
6378315686351312031069
88.8612
anovak-vgSNP*map_l100_m1_e0*
84.0947
88.8016
79.8617
69.2688
64295810863514160163537
22.0842
hfeng-pmm2INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1803
98.5845
99.7833
71.8915
6351991263530138117
84.7826
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1973
98.5845
99.8177
71.4580
635199126353111689
76.7241
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2575
98.7987
99.7206
70.8721
6365777463532178101
56.7416
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0533
97.6374
98.4728
67.8136
63807154463576986844
85.5984
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0533
97.6374
98.4728
67.8136
63807154463576986844
85.5984
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9919
97.7475
98.2375
67.0385
6387914726365211421030
90.1926
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9919
97.7475
98.2375
67.0385
6387914726365211421030
90.1926
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0945
98.9337
99.2558
72.1244
6374468763755478442
92.4686
astatham-gatkSNP*map_l100_m2_e1*
92.0052
85.3219
99.8246
70.5612
63767109706375611252
46.4286
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2241
98.9337
99.5161
74.5848
6374468763757310273
88.0645
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2755
98.9912
99.5615
74.4850
6378165063794281255
90.7473
ckim-dragenINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2418
99.0470
99.4374
74.2668
6381761463806361326
90.3047
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2824
98.0398
98.5261
67.2886
64070128163840955849
88.9005
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2824
98.0398
98.5261
67.2886
64070128163840955849
88.9005
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3055
99.0812
99.5308
74.4619
6383959263852301259
86.0465
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2748
99.1091
99.4411
74.0482
6385757463870359327
91.0864
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3188
98.0964
98.5422
67.5554
64107124463878945830
87.8307
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3188
98.0964
98.5422
67.5554
64107124463878945830
87.8307
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3672
99.1883
99.5468
74.2740
6390852363921291257
88.3162
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4538
99.1867
99.7223
73.1991
6390752463923178156
87.6404
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3985
99.2535
99.5440
74.5809
6395048163963293257
87.7133
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.1270
87.3774
95.2128
60.8815
5710282496396332162822
87.7488
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.1270
87.3774
95.2128
60.8815
5710282496396332162822
87.7488
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1034
98.6295
99.5819
70.6519
6354888364304270244
90.3704