PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83451-83500 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6632 | 99.5223 | 99.8044 | 57.7539 | 28125 | 135 | 28578 | 56 | 39 | 69.6429 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0815 | 99.5612 | 98.6064 | 70.5927 | 28586 | 126 | 28586 | 404 | 25 | 6.1881 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0815 | 99.5612 | 98.6064 | 70.5927 | 28586 | 126 | 28586 | 404 | 25 | 6.1881 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | het | 96.7434 | 96.4676 | 97.0208 | 79.0695 | 28593 | 1047 | 28593 | 878 | 245 | 27.9043 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | het | 96.4331 | 97.5578 | 95.3341 | 73.4403 | 28602 | 716 | 28605 | 1400 | 602 | 43.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | het | 98.1785 | 99.6221 | 96.7760 | 76.7928 | 29528 | 112 | 28607 | 953 | 28 | 2.9381 | |
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | het | 93.5196 | 96.3997 | 90.8067 | 76.8858 | 28864 | 1078 | 28615 | 2897 | 247 | 8.5261 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6510 | 98.5407 | 96.7772 | 70.9827 | 28293 | 419 | 28618 | 953 | 37 | 3.8825 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6510 | 98.5407 | 96.7772 | 70.9827 | 28293 | 419 | 28618 | 953 | 37 | 3.8825 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3696 | 99.2268 | 97.5271 | 78.9884 | 28490 | 222 | 28632 | 726 | 57 | 7.8512 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.3696 | 99.2268 | 97.5271 | 78.9884 | 28490 | 222 | 28632 | 726 | 57 | 7.8512 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | * | 75.3654 | 60.6881 | 99.4067 | 87.7186 | 28646 | 18556 | 28653 | 171 | 47 | 27.4854 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | het | 98.7273 | 97.7659 | 99.7078 | 62.2269 | 28663 | 655 | 28664 | 84 | 12 | 14.2857 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | * | 89.7354 | 89.2273 | 90.2494 | 52.3644 | 29768 | 3594 | 28665 | 3097 | 2248 | 72.5864 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 68.5442 | 93.9928 | 53.9399 | 70.1347 | 28649 | 1831 | 28668 | 24480 | 22479 | 91.8260 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 68.5442 | 93.9928 | 53.9399 | 70.1347 | 28649 | 1831 | 28668 | 24480 | 22479 | 91.8260 | |
| gduggal-bwavard | SNP | * | map_l125_m2_e1 | het | 94.2043 | 97.9082 | 90.7704 | 83.1773 | 29020 | 620 | 28678 | 2916 | 165 | 5.6584 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 54.3121 | 49.8996 | 59.5807 | 47.5940 | 21624 | 21711 | 28700 | 19470 | 15099 | 77.5501 | |
| eyeh-varpipe | SNP | ti | map_l125_m1_e0 | * | 99.2923 | 99.6523 | 98.9350 | 73.2001 | 29233 | 102 | 28704 | 309 | 21 | 6.7961 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4729 | 99.1955 | 97.7608 | 76.5892 | 28481 | 231 | 28728 | 658 | 53 | 8.0547 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4729 | 99.1955 | 97.7608 | 76.5892 | 28481 | 231 | 28728 | 658 | 53 | 8.0547 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 69.0093 | 82.0142 | 59.5643 | 43.2407 | 10269 | 2252 | 28735 | 19507 | 17809 | 91.2954 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7774 | 98.9308 | 96.6505 | 72.2034 | 28405 | 307 | 28740 | 996 | 22 | 2.2088 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7774 | 98.9308 | 96.6505 | 72.2034 | 28405 | 307 | 28740 | 996 | 22 | 2.2088 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | het | 98.8614 | 98.0285 | 99.7086 | 70.3185 | 28740 | 578 | 28740 | 84 | 36 | 42.8571 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | * | 92.7527 | 90.2330 | 95.4173 | 85.0649 | 28741 | 3111 | 28754 | 1381 | 761 | 55.1050 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | * | 98.9923 | 98.1217 | 99.8786 | 58.7041 | 28784 | 551 | 28785 | 35 | 10 | 28.5714 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | het | 98.5451 | 97.3516 | 99.7684 | 58.0187 | 28855 | 785 | 28856 | 67 | 6 | 8.9552 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e0 | * | 93.8841 | 96.2555 | 91.6267 | 79.1557 | 29125 | 1133 | 28856 | 2637 | 225 | 8.5324 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | * | 99.1074 | 98.4080 | 99.8167 | 62.4199 | 28868 | 467 | 28869 | 53 | 19 | 35.8491 | |
| gduggal-bwavard | SNP | ti | map_l100_m1_e0 | het | 95.5858 | 97.2580 | 93.9701 | 77.5354 | 29121 | 821 | 28877 | 1853 | 139 | 7.5014 | |
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | * | 93.5349 | 92.9971 | 94.0789 | 54.5678 | 30424 | 2291 | 28886 | 1818 | 1258 | 69.1969 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002complexvar | * | 92.5060 | 86.7938 | 99.0230 | 59.4097 | 28957 | 4406 | 28886 | 285 | 203 | 71.2281 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | het | 96.1447 | 97.3583 | 94.9610 | 78.6712 | 28857 | 783 | 28890 | 1533 | 346 | 22.5701 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2987 | 96.2828 | 98.3362 | 70.4045 | 29347 | 1133 | 28902 | 489 | 430 | 87.9346 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2987 | 96.2828 | 98.3362 | 70.4045 | 29347 | 1133 | 28902 | 489 | 430 | 87.9346 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | * | 99.1869 | 98.5512 | 99.8308 | 67.6959 | 28910 | 425 | 28910 | 49 | 27 | 55.1020 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | het | 96.4602 | 97.5843 | 95.3616 | 73.5220 | 28924 | 716 | 28927 | 1407 | 602 | 42.7861 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.1713 | 81.5015 | 91.4087 | 79.3482 | 28867 | 6552 | 28940 | 2720 | 211 | 7.7574 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | * | 98.1866 | 98.6569 | 97.7208 | 74.6512 | 28941 | 394 | 28941 | 675 | 158 | 23.4074 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | het | 99.2355 | 98.7312 | 99.7450 | 71.3586 | 28946 | 372 | 28946 | 74 | 28 | 37.8378 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e0 | het | 98.4559 | 98.7380 | 98.1754 | 76.1231 | 28948 | 370 | 28948 | 538 | 123 | 22.8625 | |
| jli-custom | SNP | * | map_l125_m2_e0 | het | 99.0801 | 98.8232 | 99.3382 | 70.5778 | 28973 | 345 | 28970 | 193 | 54 | 27.9793 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6456 | 96.4829 | 98.8367 | 71.2472 | 29408 | 1072 | 28971 | 341 | 255 | 74.7801 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6456 | 96.4829 | 98.8367 | 71.2472 | 29408 | 1072 | 28971 | 341 | 255 | 74.7801 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | het | 98.7345 | 97.7868 | 99.7007 | 62.3395 | 28984 | 656 | 28985 | 87 | 12 | 13.7931 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7526 | 96.6010 | 98.9320 | 70.8092 | 29444 | 1036 | 28994 | 313 | 239 | 76.3578 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7526 | 96.6010 | 98.9320 | 70.8092 | 29444 | 1036 | 28994 | 313 | 239 | 76.3578 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | * | 96.7083 | 98.8614 | 94.6470 | 78.3386 | 29001 | 334 | 28997 | 1640 | 151 | 9.2073 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | * | 98.9304 | 98.8478 | 99.0132 | 72.1354 | 28997 | 338 | 28997 | 289 | 84 | 29.0657 | |