PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82451-82500 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | * | hetalt | 87.6357 | 79.0308 | 98.3434 | 43.3219 | 19945 | 5292 | 20303 | 342 | 304 | 88.8889 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | het | 97.7232 | 97.5199 | 97.9274 | 51.5698 | 20250 | 515 | 20317 | 430 | 365 | 84.8837 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | * | 99.3647 | 99.1322 | 99.5983 | 75.0541 | 20334 | 178 | 20330 | 82 | 23 | 28.0488 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 57.8545 | 55.6351 | 60.2584 | 48.5091 | 20358 | 16234 | 20333 | 13410 | 13207 | 98.4862 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | * | 98.9537 | 98.1229 | 99.7988 | 69.2768 | 20334 | 389 | 20338 | 41 | 16 | 39.0244 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002complexvar | het | 98.9178 | 97.9388 | 99.9165 | 54.1519 | 20337 | 428 | 20340 | 17 | 9 | 52.9412 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e0 | * | 99.2366 | 99.1907 | 99.2825 | 78.2548 | 20346 | 166 | 20342 | 147 | 36 | 24.4898 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002complexvar | het | 98.9180 | 97.9581 | 99.8969 | 54.5187 | 20341 | 424 | 20346 | 21 | 14 | 66.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | het | 98.9112 | 97.9918 | 99.8479 | 54.6492 | 20348 | 417 | 20351 | 31 | 19 | 61.2903 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | het | 98.9670 | 98.0448 | 99.9068 | 54.1875 | 20359 | 406 | 20363 | 19 | 11 | 57.8947 | |
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | het | 96.3156 | 96.0340 | 96.5990 | 77.1422 | 20364 | 841 | 20365 | 717 | 214 | 29.8466 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002complexvar | het | 99.3002 | 99.0946 | 99.5066 | 51.3766 | 20577 | 188 | 20368 | 101 | 44 | 43.5644 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | * | 99.1869 | 99.3321 | 99.0422 | 77.0287 | 20375 | 137 | 20371 | 197 | 37 | 18.7817 | |
| ndellapenna-hhga | SNP | ti | map_l150_m2_e1 | * | 99.0741 | 98.3690 | 99.7895 | 74.1500 | 20385 | 338 | 20385 | 43 | 23 | 53.4884 | |
| gduggal-bwaplat | INDEL | D6_15 | * | * | 86.9684 | 78.1121 | 98.0899 | 65.2244 | 20381 | 5711 | 20387 | 397 | 273 | 68.7657 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | * | 99.3133 | 99.4247 | 99.2021 | 77.6100 | 20394 | 118 | 20390 | 164 | 20 | 12.1951 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e0 | * | 99.5024 | 99.4394 | 99.5655 | 75.5202 | 20397 | 115 | 20393 | 89 | 14 | 15.7303 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | * | 97.8866 | 98.4558 | 97.3240 | 80.2448 | 20403 | 320 | 20403 | 561 | 134 | 23.8859 | |
| cchapple-custom | INDEL | D6_15 | * | het | 98.5018 | 98.2488 | 98.7561 | 48.6146 | 11389 | 203 | 20403 | 257 | 215 | 83.6576 | |
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | het | 95.4621 | 98.5649 | 92.5488 | 58.7032 | 20467 | 298 | 20407 | 1643 | 1130 | 68.7766 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | het | 97.8863 | 98.0978 | 97.6758 | 52.4481 | 20370 | 395 | 20424 | 486 | 392 | 80.6584 | |
| gduggal-snapfb | INDEL | D6_15 | * | * | 82.6720 | 75.4063 | 91.4873 | 42.8991 | 19675 | 6417 | 20441 | 1902 | 1873 | 98.4753 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4609 | 80.8686 | 97.6264 | 81.5863 | 20446 | 4837 | 20442 | 497 | 17 | 3.4205 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | * | 98.7513 | 98.6488 | 98.8540 | 78.0171 | 20443 | 280 | 20443 | 237 | 70 | 29.5359 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | * | 96.1985 | 98.6826 | 93.8363 | 83.3002 | 20450 | 273 | 20446 | 1343 | 127 | 9.4564 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4662 | 80.9714 | 97.4899 | 81.7669 | 20472 | 4811 | 20468 | 527 | 16 | 3.0361 | |
| ltrigg-rtg2 | SNP | * | map_l100_m0_e0 | het | 98.1524 | 96.5763 | 99.7808 | 50.2243 | 20479 | 726 | 20484 | 45 | 3 | 6.6667 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | het | 99.2391 | 98.6082 | 99.8781 | 56.4759 | 20476 | 289 | 20484 | 25 | 15 | 60.0000 | |
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | het | 93.1046 | 97.6656 | 88.9506 | 81.2913 | 20710 | 495 | 20488 | 2545 | 125 | 4.9116 | |
| jli-custom | SNP | ti | map_l150_m2_e1 | * | 99.2158 | 98.9046 | 99.5289 | 73.2251 | 20496 | 227 | 20494 | 97 | 36 | 37.1134 | |
| ckim-vqsr | SNP | * | map_l125_m2_e1 | het | 81.3082 | 69.1532 | 98.6474 | 89.1453 | 20497 | 9143 | 20494 | 281 | 4 | 1.4235 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | * | 99.1367 | 98.9191 | 99.3552 | 75.1649 | 20499 | 224 | 20495 | 133 | 93 | 69.9248 | |
| ckim-dragen | SNP | ti | map_l150_m2_e1 | * | 98.2199 | 98.8901 | 97.5587 | 78.2933 | 20493 | 230 | 20500 | 513 | 69 | 13.4503 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | * | 98.9365 | 98.9963 | 98.8768 | 75.5106 | 20515 | 208 | 20511 | 233 | 9 | 3.8627 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e1 | * | 99.3895 | 98.9866 | 99.7957 | 75.2728 | 20513 | 210 | 20513 | 42 | 20 | 47.6190 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | het | 97.2093 | 99.5661 | 94.9614 | 74.6186 | 21113 | 92 | 20524 | 1089 | 21 | 1.9284 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e1 | * | 99.3663 | 99.1362 | 99.5975 | 75.1263 | 20544 | 179 | 20540 | 83 | 23 | 27.7108 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e1 | * | 99.2396 | 99.1990 | 99.2803 | 78.3146 | 20557 | 166 | 20553 | 149 | 36 | 24.1611 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.4367 | 96.0623 | 98.8510 | 34.0969 | 19785 | 811 | 20562 | 239 | 223 | 93.3054 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | * | 99.1904 | 99.3389 | 99.0424 | 77.0978 | 20586 | 137 | 20582 | 199 | 37 | 18.5930 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | het | 95.9914 | 97.0526 | 94.9532 | 68.8933 | 20580 | 625 | 20583 | 1094 | 492 | 44.9726 | |
| cchapple-custom | SNP | * | map_l100_m0_e0 | het | 95.9513 | 97.0667 | 94.8612 | 75.7604 | 20583 | 622 | 20601 | 1116 | 255 | 22.8495 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e1 | * | 99.3155 | 99.4306 | 99.2007 | 77.6747 | 20605 | 118 | 20601 | 166 | 20 | 12.0482 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.4279 | 81.5933 | 87.4666 | 33.3286 | 20023 | 4517 | 20601 | 2952 | 2912 | 98.6450 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e1 | * | 99.5026 | 99.4402 | 99.5651 | 75.5918 | 20607 | 116 | 20603 | 90 | 14 | 15.5556 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | het | 98.4261 | 97.1705 | 99.7145 | 55.4883 | 20605 | 600 | 20610 | 59 | 8 | 13.5593 | |
| ckim-dragen | INDEL | D1_5 | HG002complexvar | het | 99.7370 | 99.6292 | 99.8451 | 55.8027 | 20688 | 77 | 20632 | 32 | 11 | 34.3750 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | het | 94.7486 | 94.6159 | 94.8816 | 54.6441 | 19647 | 1118 | 20632 | 1113 | 329 | 29.5597 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002complexvar | het | 99.5249 | 99.3402 | 99.7103 | 55.5097 | 20628 | 137 | 20652 | 60 | 48 | 80.0000 | |
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | * | 92.9211 | 95.6915 | 90.3065 | 76.7821 | 20833 | 938 | 20654 | 2217 | 198 | 8.9310 | |