PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82251-82300 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | het | 93.0021 | 97.9685 | 88.5150 | 85.7521 | 19724 | 409 | 19491 | 2529 | 126 | 4.9822 | |
| rpoplin-dv42 | SNP | ti | segdup | * | 99.7773 | 99.7799 | 99.7748 | 89.3733 | 19494 | 43 | 19492 | 44 | 19 | 43.1818 | |
| ckim-dragen | SNP | ti | map_l150_m1_e0 | * | 98.2015 | 98.8636 | 97.5482 | 76.3868 | 19488 | 224 | 19495 | 490 | 66 | 13.4694 | |
| hfeng-pmm1 | SNP | ti | segdup | * | 99.7442 | 99.8004 | 99.6881 | 88.7407 | 19498 | 39 | 19496 | 61 | 5 | 8.1967 | |
| raldana-dualsentieon | SNP | ti | segdup | * | 99.6041 | 99.8055 | 99.4035 | 89.2386 | 19499 | 38 | 19497 | 117 | 4 | 3.4188 | |
| jlack-gatk | SNP | ti | segdup | * | 98.4574 | 99.8106 | 97.1403 | 92.8551 | 19500 | 37 | 19498 | 574 | 10 | 1.7422 | |
| hfeng-pmm2 | SNP | ti | segdup | * | 99.6754 | 99.8157 | 99.5355 | 89.6871 | 19501 | 36 | 19499 | 91 | 9 | 9.8901 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8464 | 98.6772 | 97.0296 | 69.0281 | 19320 | 259 | 19501 | 597 | 25 | 4.1876 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8464 | 98.6772 | 97.0296 | 69.0281 | 19320 | 259 | 19501 | 597 | 25 | 4.1876 | |
| hfeng-pmm3 | SNP | ti | segdup | * | 99.7137 | 99.8311 | 99.5965 | 88.9183 | 19504 | 33 | 19502 | 79 | 3 | 3.7975 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.2014 | 99.6118 | 98.7944 | 67.9415 | 19503 | 76 | 19503 | 238 | 15 | 6.3025 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.2014 | 99.6118 | 98.7944 | 67.9415 | 19503 | 76 | 19503 | 238 | 15 | 6.3025 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | * | 98.9223 | 98.9600 | 98.8846 | 73.7335 | 19507 | 205 | 19503 | 220 | 8 | 3.6364 | |
| egarrison-hhga | SNP | ti | map_l150_m1_e0 | * | 99.3657 | 98.9448 | 99.7902 | 73.6441 | 19504 | 208 | 19504 | 41 | 20 | 48.7805 | |
| dgrover-gatk | SNP | ti | segdup | * | 99.6780 | 99.8413 | 99.5153 | 89.9275 | 19506 | 31 | 19504 | 95 | 6 | 6.3158 | |
| ckim-dragen | SNP | ti | segdup | * | 98.5623 | 99.8106 | 97.3449 | 91.6401 | 19500 | 37 | 19505 | 532 | 9 | 1.6917 | |
| bgallagher-sentieon | SNP | ti | segdup | * | 99.5103 | 99.8567 | 99.1663 | 89.5899 | 19509 | 28 | 19507 | 164 | 6 | 3.6585 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7584 | 99.2747 | 98.2475 | 76.8599 | 19437 | 142 | 19509 | 348 | 40 | 11.4943 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7584 | 99.2747 | 98.2475 | 76.8599 | 19437 | 142 | 19509 | 348 | 40 | 11.4943 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 65.0019 | 66.3696 | 63.6895 | 52.5107 | 13181 | 6679 | 19510 | 11123 | 7883 | 70.8712 | |
| jli-custom | SNP | ti | segdup | * | 99.6094 | 99.8669 | 99.3533 | 88.6519 | 19511 | 26 | 19511 | 127 | 6 | 4.7244 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | * | 88.0506 | 79.8294 | 98.1596 | 77.4096 | 19559 | 4942 | 19521 | 366 | 304 | 83.0601 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8166 | 98.1371 | 99.5056 | 55.0392 | 19492 | 370 | 19523 | 97 | 32 | 32.9897 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | het | 95.8306 | 96.9701 | 94.7174 | 76.6962 | 19523 | 610 | 19526 | 1089 | 509 | 46.7401 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | * | 92.6480 | 96.1047 | 89.4313 | 82.4164 | 19713 | 799 | 19530 | 2308 | 189 | 8.1889 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | * | 99.3490 | 99.1071 | 99.5921 | 73.5929 | 19536 | 176 | 19532 | 80 | 23 | 28.7500 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | het | 96.2073 | 95.9191 | 96.4972 | 82.5948 | 19532 | 831 | 19532 | 709 | 207 | 29.1961 | |
| cchapple-custom | SNP | * | map_l150_m2_e0 | het | 95.7599 | 96.9701 | 94.5794 | 81.9061 | 19523 | 610 | 19542 | 1120 | 245 | 21.8750 | |
| dgrover-gatk | SNP | ti | map_l150_m1_e0 | * | 99.2284 | 99.1782 | 99.2787 | 76.9359 | 19550 | 162 | 19546 | 142 | 35 | 24.6479 | |
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | het | 94.9162 | 98.4397 | 91.6362 | 58.2975 | 20441 | 324 | 19546 | 1784 | 1236 | 69.2825 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6551 | 99.1981 | 98.1180 | 73.7453 | 19422 | 157 | 19551 | 375 | 40 | 10.6667 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6551 | 99.1981 | 98.1180 | 73.7453 | 19422 | 157 | 19551 | 375 | 40 | 10.6667 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0655 | 98.4745 | 99.6636 | 56.9081 | 19559 | 303 | 19552 | 66 | 47 | 71.2121 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | het | 92.0015 | 90.8693 | 93.1622 | 52.9821 | 18869 | 1896 | 19565 | 1436 | 834 | 58.0780 | |
| ltrigg-rtg1 | SNP | * | map_l150_m2_e0 | het | 98.4430 | 97.1937 | 99.7248 | 66.0349 | 19568 | 565 | 19569 | 54 | 9 | 16.6667 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.9702 | 98.9938 | 96.9676 | 70.5278 | 19382 | 197 | 19570 | 612 | 14 | 2.2876 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.9702 | 98.9938 | 96.9676 | 70.5278 | 19382 | 197 | 19570 | 612 | 14 | 2.2876 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1492 | 98.5802 | 99.7249 | 57.4159 | 19580 | 282 | 19573 | 54 | 32 | 59.2593 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | * | 99.1792 | 99.3202 | 99.0387 | 75.5864 | 19578 | 134 | 19574 | 190 | 36 | 18.9474 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.2893 | 95.0573 | 97.5536 | 44.7868 | 19578 | 1018 | 19579 | 491 | 468 | 95.3157 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2201 | 98.6457 | 99.8013 | 56.9126 | 19593 | 269 | 19586 | 39 | 21 | 53.8462 | |
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | * | 99.2981 | 99.4065 | 99.1899 | 76.2408 | 19595 | 117 | 19591 | 160 | 20 | 12.5000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8957 | 98.4694 | 99.3257 | 54.3646 | 19558 | 304 | 19592 | 133 | 45 | 33.8346 | |
| hfeng-pmm3 | SNP | ti | map_l150_m1_e0 | * | 99.4898 | 99.4217 | 99.5579 | 74.0428 | 19598 | 114 | 19594 | 87 | 14 | 16.0920 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8948 | 98.6708 | 99.1198 | 73.7421 | 19598 | 264 | 19594 | 174 | 146 | 83.9080 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2054 | 98.6910 | 99.7252 | 56.8874 | 19602 | 260 | 19598 | 54 | 35 | 64.8148 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2458 | 98.7161 | 99.7811 | 57.1497 | 19607 | 255 | 19600 | 43 | 25 | 58.1395 | |
| ckim-isaac | INDEL | I6_15 | * | * | 86.2978 | 78.9268 | 95.1875 | 41.9911 | 19592 | 5231 | 19601 | 991 | 727 | 73.3602 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | het | 93.0063 | 92.3697 | 93.6518 | 83.5542 | 19587 | 1618 | 19606 | 1329 | 738 | 55.5305 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1711 | 98.8017 | 99.5433 | 59.8357 | 19624 | 238 | 19617 | 90 | 58 | 64.4444 | |